Factsheet for GSMUA_Achr7P13060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G309800.1	Wheat	mitochondrion	58.54	45.28
Zm00001d052154_P001	Maize	mitochondrion	56.91	44.03
TraesCS6A01G330700.1	Wheat	mitochondrion	56.5	42.64
Os02t0767600-00	Rice	mitochondrion	56.1	42.07
KXG31176	Sorghum	plastid	60.16	41.57
Zm00001d018190_P001	Maize	mitochondrion	55.69	41.14
TraesCS6B01G361600.1	Wheat	mitochondrion	54.06	39.47
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	53.25	39.34
GSMUA_Achr8P09890_001	Banana	nucleus	34.15	36.36
HORVU0Hr1G019650.1	Barley	mitochondrion	45.53	35.33
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	45.53	35.11
TraesCS7D01G170800.1	Wheat	mitochondrion	45.53	35.0
TraesCS7B01G074800.1	Wheat	mitochondrion	44.72	34.16
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	45.94	33.24
EER89401	Sorghum	mitochondrion, nucleus	45.12	33.23
VIT_18s0001g03270.t01	Wine grape	nucleus	43.9	32.43
CDX74533	Canola	cytosol	38.21	32.19
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	33.33	31.42
PGSC0003DMT400002370	Potato	cytosol	41.06	31.27
Solyc11g012950.1.1	Tomato	cytosol	41.46	30.63
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	30.89	29.34
GSMUA_Achr5P19380_001	Banana	plastid	22.76	29.32
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.62	29.23
CDY01669	Canola	plastid	38.21	29.1
GSMUA_AchrUn_...	Banana	nucleus	30.49	29.07
AT1G60360.1	Thale cress	nucleus	38.62	29.05
KRH64713	Soybean	nucleus	40.24	28.12
GSMUA_Achr9P05060_001	Banana	nucleus	21.14	27.96
GSMUA_Achr10P...	Banana	nucleus	31.3	27.3
GSMUA_Achr11P...	Banana	mitochondrion	32.93	27.09
GSMUA_Achr11P...	Banana	nucleus	29.27	26.67
PGSC0003DMT400061055	Potato	extracellular	32.11	26.51
Solyc01g104260.2.1	Tomato	mitochondrion	31.71	26.0
KRH44018	Soybean	mitochondrion	32.11	24.92
GSMUA_Achr5P07680_001	Banana	nucleus	30.08	24.83
KRH10441	Soybean	mitochondrion	31.71	24.3
GSMUA_Achr6P08590_001	Banana	nucleus	28.05	23.55
GSMUA_Achr7P15040_001	Banana	mitochondrion	30.08	23.42
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	32.93	23.08
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	31.71	22.67
GSMUA_Achr10P...	Banana	nucleus	27.24	22.11
GSMUA_Achr7P18340_001	Banana	nucleus	26.83	22.0
GSMUA_Achr10P...	Banana	mitochondrion	30.08	21.96
GSMUA_Achr2P03780_001	Banana	cytosol	30.08	21.08
GSMUA_Achr5P07070_001	Banana	nucleus	28.05	20.97
GSMUA_Achr2P19140_001	Banana	mitochondrion	30.49	20.72
VIT_12s0034g01390.t01	Wine grape	mitochondrion	34.96	19.07
GSMUA_Achr10P...	Banana	mitochondrion	30.49	18.66
GSMUA_Achr8P24510_001	Banana	cytosol	18.7	11.62
GSMUA_Achr4P02460_001	Banana	nucleus	18.29	10.87
GSMUA_Achr3P06300_001	Banana	cytosol	17.48	8.24
GSMUA_Achr11P...	Banana	cytosol	21.54	7.31

Protein Annotations

EnsemblPlants:GSMUA_Achr7P13060_001	EnsemblPlants:GSMUA_Achr7T13060_001	EnsemblPlantsGene:GSMUA_Achr7G13060_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF3	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029622F8	UniProt:M0TH43
MapMan:35.1	:	:	:	:	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G13060_001]

Coordinates

chr7:+:10531269..10532534

Molecular Weight (calculated)

27809.7 Da

IEP (calculated)

6.494

GRAVY (calculated)

-0.587

Length

246 amino acids

Sequence
(BLAST)

001: MSLRPSAPRT CRLFWCYQCH RAVRIICSPA ADVLCPRCYG RFLHEIDLPR PRLLDSDDGR RNPSEEPSIP AAVRPADYYT GPNLNELINE LTQNDRPGPP
101: PAPAPAIEAM PTVSITEAHL TDGSQCPVCK EEFSLGEEAR EMPCKHVYHS ECIVPWLSMH NSCPVCRFQL PGAGNGGGQE NRASGSSNTG SGRSRRQDRW
201: NPFFQLWPFR ESLHTGDYQY RGLEEHEDIF SSPGAFYSWW RSLFLL

Best Arabidopsis Sequence Match ( AT2G40830.1 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.