Factsheet for GSMUA_Achr10P13720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005650.2.1	Tomato	extracellular	29.79	42.0
GSMUA_Achr7P15040_001	Banana	mitochondrion	45.04	40.19
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.94	39.32
GSMUA_Achr5P07070_001	Banana	nucleus	44.68	38.3
GSMUA_Achr10P...	Banana	mitochondrion	45.04	37.69
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	44.68	36.63
GSMUA_Achr2P19140_001	Banana	mitochondrion	44.33	34.53
KRH10229	Soybean	nucleus	37.23	33.44
KRH23103	Soybean	nucleus	37.23	33.44
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	44.68	32.64
GSMUA_Achr7P13060_001	Banana	mitochondrion	27.3	31.3
GSMUA_Achr8P09890_001	Banana	nucleus	25.53	31.17
CDY20473	Canola	nucleus, plastid	36.88	31.14
KRH30994	Soybean	nucleus	43.26	31.04
CDX80258	Canola	plastid	39.01	30.99
Bra005020.1-P	Field mustard	nucleus, plastid	37.23	30.79
CDY53450	Canola	cytosol	35.11	30.75
GSMUA_Achr10P...	Banana	mitochondrion	43.62	30.6
CDX74839	Canola	cytosol, plastid	35.11	30.56
PGSC0003DMT400005512	Potato	mitochondrion	41.13	30.05
PGSC0003DMT400016233	Potato	nucleus	41.84	29.95
KRG97885	Soybean	mitochondrion	37.59	29.69
Solyc04g011610.1.1	Tomato	nucleus	41.49	29.62
CDY61251	Canola	cytosol	37.59	29.36
KRH29763	Soybean	nucleus	37.59	29.36
GSMUA_Achr5P19380_001	Banana	plastid	19.86	29.32
GSMUA_AchrUn_...	Banana	nucleus	26.6	29.07
Bra000143.1-P	Field mustard	nucleus	37.94	28.53
KRH24759	Soybean	nucleus	36.52	28.53
Bra002559.1-P	Field mustard	plastid	40.07	28.46
CDY48679	Canola	cytosol, plastid	33.69	28.44
CDY07641	Canola	nucleus	37.59	28.34
CDY24951	Canola	nucleus	37.59	28.27
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.23	28.15
Bra020313.1-P	Field mustard	plastid	38.65	28.02
CDY33046	Canola	plastid	33.33	27.49
AT2G39720.2	Thale cress	nucleus	39.01	27.43
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	25.18	27.41
Bra006709.1-P	Field mustard	plastid	37.94	27.23
CDX88709	Canola	cytosol, plastid	37.94	27.16
AT3G46620.1	Thale cress	cytosol, plastid	37.94	27.09
CDX99105	Canola	cytosol, plastid	30.5	26.54
KRH15082	Soybean	nucleus	35.82	26.44
KRH73053	Soybean	nucleus	36.52	26.34
GSMUA_Achr9P05060_001	Banana	nucleus	15.96	24.19
GSMUA_Achr11P...	Banana	nucleus	21.99	22.96
GSMUA_Achr6P08590_001	Banana	nucleus	23.76	22.87
GSMUA_Achr11P...	Banana	mitochondrion	22.7	21.4
GSMUA_Achr7P18340_001	Banana	nucleus	22.7	21.33
AT5G59550.2	Thale cress	nucleus, plastid	38.65	21.29
GSMUA_Achr2P03780_001	Banana	cytosol	26.24	21.08
GSMUA_Achr10P...	Banana	nucleus	21.63	20.13
GSMUA_Achr5P07680_001	Banana	nucleus	20.57	19.46
GSMUA_Achr4P02460_001	Banana	nucleus	18.44	12.56
GSMUA_Achr8P24510_001	Banana	cytosol	17.02	12.12
GSMUA_Achr3P06300_001	Banana	cytosol	15.96	8.62
GSMUA_Achr11P...	Banana	cytosol	21.28	8.28

Protein Annotations

EnsemblPlants:GSMUA_Achr10P13720_001	EnsemblPlants:GSMUA_Achr10T13720_001	EnsemblPlantsGene:GSMUA_Achr10G13720_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002965764	UniProt:M0RHZ8	MapMan:35.1

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G13720_001]

Coordinates

chr10:-:22225709..22229654

Molecular Weight (calculated)

31703.5 Da

IEP (calculated)

5.372

GRAVY (calculated)

-0.396

Length

282 amino acids

Sequence
(BLAST)

001: MASMETASTY WCHHCCRFVL IWPWDAVICP DCGGGFLDAP GRFPLASETA TEPRRRRVPS AVDNSSAAVG RRRHSFELYY DDGTRSGLRP LPESMSEFLM
101: GSGLERILDQ LSQTEVDGIG GAPGFEYSPA SKVAIESMPT IEIADGHITT ESHCAVCKDP FELGTEVREM PCKHIYHQDC ILPWLSLRNS CPLCRHEMPT
201: DLAASGYCFQ PLHATCFVFS NDLLKESCVV INTKYDGGQQ EQHRARQTEP EKICDKSLPC LPWAWETRCR TNRQEREDMV SC

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.