CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020313.1-P	Field mustard	plastid	95.81	82.26
CDY33046	Canola	plastid	82.63	80.7
CDY53450	Canola	cytosol	72.46	75.16
CDX80258	Canola	plastid	76.05	71.55
CDX88709	Canola	cytosol, plastid	82.04	69.54
CDX99105	Canola	cytosol, plastid	64.07	66.05
CDY61251	Canola	cytosol	65.57	60.66
AT5G59550.2	Thale cress	nucleus, plastid	83.23	54.3
Os03t0271600-01	Rice	plastid	38.02	45.52
KRH10229	Soybean	nucleus	42.52	45.22
KRH23103	Soybean	nucleus	42.52	45.22
EER95109	Sorghum	plastid	37.13	45.09
GSMUA_Achr7P15040_001	Banana	mitochondrion	42.52	44.94
Zm00001d028590_P001	Maize	plastid	37.13	44.6
Zm00001d047824_P001	Maize	plastid	37.13	44.6
TraesCS4A01G095800.1	Wheat	cytosol	37.13	44.29
TraesCS4B01G209100.1	Wheat	plastid	37.13	44.29
TraesCS4D01G209500.1	Wheat	plastid	37.13	44.29
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	46.41	44.16
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.62	40.41
KRH24759	Soybean	nucleus	43.11	39.89
CDX74839	Canola	cytosol, plastid	38.62	39.81
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	45.81	39.64
GSMUA_Achr10P...	Banana	mitochondrion	39.82	39.47
KRH29763	Soybean	nucleus	42.52	39.34
CDY20473	Canola	nucleus, plastid	39.22	39.22
Zm00001d035677_P001	Maize	plastid	39.52	37.93
PGSC0003DMT400005512	Potato	mitochondrion	43.71	37.82
TraesCS3D01G532300.1	Wheat	cytosol	43.41	37.56
GSMUA_Achr5P07070_001	Banana	nucleus	36.83	37.39
CDY07641	Canola	nucleus	41.62	37.17
TraesCS3B01G595200.1	Wheat	cytosol	44.31	37.09
CDY24951	Canola	nucleus	41.32	36.8
Os05t0110000-01	Rice	mitochondrion	36.23	36.34
GSMUA_Achr2P19140_001	Banana	mitochondrion	39.22	36.19
TraesCS1A01G029800.1	Wheat	cytosol	43.11	36.09
TraesCS1B01G036900.1	Wheat	cytosol	42.52	35.59
TraesCS1D01G030300.1	Wheat	nucleus	42.81	35.57
HORVU4Hr1G060130.1	Barley	cytosol	37.43	35.51
HORVU1Hr1G004330.14	Barley	cytosol	42.52	35.41
EES17560	Sorghum	plastid	43.41	35.11
Zm00001d011076_P001	Maize	plastid	40.42	34.88
GSMUA_Achr10P...	Banana	mitochondrion	41.92	34.83
Os01t0972000-01	Rice	nucleus	34.13	34.13
GSMUA_Achr10P...	Banana	nucleus	28.44	33.69
Solyc06g005650.2.1	Tomato	extracellular	20.06	33.5
HORVU7Hr1G055010.1	Barley	cytosol	21.86	33.03
HORVU3Hr1G041030.1	Barley	mitochondrion	36.83	31.78
HORVU3Hr1G115000.7	Barley	mitochondrion	36.53	31.12
CDY36069	Canola	cytosol	17.96	27.65
CDX82271	Canola	cytosol	17.37	27.23
CDY72364	Canola	cytosol	17.96	27.03
CDX75998	Canola	nucleus	14.97	26.04
CDY68603	Canola	cytosol	17.37	23.97
CDX94665	Canola	nucleus	16.77	23.83
CDY22483	Canola	mitochondrion	21.56	23.76
CDY32333	Canola	cytosol	16.47	23.4
CDY23878	Canola	mitochondrion, nucleus	21.26	23.28
CDY35437	Canola	mitochondrion, nucleus	21.86	23.03
CDX74533	Canola	cytosol	20.06	22.95
CDY01669	Canola	plastid	21.86	22.6
CDY24592	Canola	nucleus	21.56	22.43
CDX79968	Canola	mitochondrion, nucleus	19.76	22.22
CDY33437	Canola	cytosol	21.56	22.22
CDY46577	Canola	nucleus	19.16	21.99
CDY26096	Canola	nucleus	19.16	21.77
CDY25360	Canola	cytosol, nucleus, plastid	20.96	21.67
CDY50031	Canola	cytosol	18.56	21.38
CDY10554	Canola	cytosol	19.46	21.31
CDY27204	Canola	mitochondrion, nucleus	19.76	21.15
CDX72127	Canola	mitochondrion	19.76	20.89
CDY56022	Canola	nucleus	19.46	20.77
CDX94901	Canola	cytosol	18.56	19.75
CDY56081	Canola	nucleus	14.07	19.67
CDX92768	Canola	nucleus	17.96	19.42
CDX81263	Canola	cytosol, peroxisome, plastid	16.77	19.31
CDY22790	Canola	nucleus	15.57	19.26
CDY08249	Canola	cytosol	19.16	19.1
CDY56080	Canola	cytosol	16.17	19.01
CDY43991	Canola	nucleus	17.37	18.77
CDY18690	Canola	cytosol, peroxisome, plastid	16.77	18.73
CDY42740	Canola	nucleus	17.96	18.63
CDX92770	Canola	nucleus	17.96	18.52
CDY32791	Canola	nucleus	19.16	18.18
CDY01221	Canola	cytosol	11.68	17.89
CDY42507	Canola	cytosol	17.66	17.4
CDX89343	Canola	cytosol, mitochondrion	17.96	17.05
CDY28208	Canola	cytosol	11.08	15.95
CDX94342	Canola	mitochondrion, nucleus	18.26	15.76
CDY02194	Canola	peroxisome	17.07	14.32
CDY58938	Canola	nucleus	18.86	14.29
CDY03622	Canola	nucleus	18.86	14.13
CDY51628	Canola	peroxisome	17.07	14.04
CDX78323	Canola	cytosol	11.98	13.89
CDY69134	Canola	cytosol	11.98	13.75
CDX90972	Canola	cytosol	13.47	13.43
CDY21513	Canola	cytosol	14.07	13.2
CDX69973	Canola	cytosol	14.07	13.06
CDX85531	Canola	cytosol	13.17	12.83
CDY34722	Canola	cytosol	14.67	12.56
CDX69496	Canola	cytosol	10.78	12.5
CDY26465	Canola	cytosol	12.57	12.39
CDY34721	Canola	cytosol	14.37	12.31
CDY11934	Canola	nucleus	20.36	10.43
CDY23599	Canola	golgi, mitochondrion	17.37	9.52

Protein Annotations

EnsemblPlants:CDY48679	EnsemblPlantsGene:GSBRNA2T00091551001	Gene3D:3.30.40.10	GO:A0A078IH03	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:CDY48679	ProteinID:CDY48679.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDEC10	UniProt:A0A078IH03	MapMan:35.1	:

Description

BnaC02g09910DBnaC02g09910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH03]

Coordinates

chrLK032786:+:39215..40372

Molecular Weight (calculated)

35766.7 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.430

Length

334 amino acids

Sequence
(BLAST)

001: MPSTPPTTPI TTSYWCYSCT RFVSVWAEQG TTNGLACPHC DGGFIEQVTD SSTAAAELAS PASTEVRSIN SSHRRAFEFY YDDGSGSGLR PLPDSQLSQI
101: EATGAGLGRS GNPPASKSAI ESLPRVEISD CHITAEANCA VCTEVFEGET EAREMPCKHI FHEDCIVPWL SIRNSCPVCR FEIPSESNQR SSEEGDSAVG
201: MTIWRLPGGG FAVGRFNAAM RDGERVLPVV LTEMDGGGLG GNSEGPRRIS WVRGNGAVES DGSNGGGSGS GGRLRRMVRG MVSLMRRVRP NRGSSAAVSA
301: SDSEVESRVM DRSNSVLRRY FGRNRSNRGS SVLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.