Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32791 | Canola | nucleus | 94.85 | 78.41 |
| AT5G56340.1 | Thale cress | nucleus | 85.22 | 62.63 |
| CDX92768 | Canola | nucleus | 57.73 | 54.37 |
| CDX92770 | Canola | nucleus | 57.73 | 51.85 |
| CDY42740 | Canola | nucleus | 56.7 | 51.24 |
| KRG97316 | Soybean | nucleus | 59.45 | 50.29 |
| CDX89343 | Canola | cytosol, mitochondrion | 59.45 | 49.15 |
| GSMUA_Achr11P... | Banana | nucleus | 43.99 | 47.41 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 58.76 | 46.47 |
| CDY43991 | Canola | nucleus | 49.14 | 46.28 |
| PGSC0003DMT400046527 | Potato | nucleus | 57.04 | 46.11 |
| CDY26096 | Canola | nucleus | 45.7 | 45.24 |
| CDY08249 | Canola | cytosol | 51.2 | 44.48 |
| CDX94342 | Canola | mitochondrion, nucleus | 57.39 | 43.15 |
| CDY56022 | Canola | nucleus | 45.7 | 42.49 |
| CDY10554 | Canola | cytosol | 43.99 | 41.97 |
| CDY56080 | Canola | cytosol | 39.86 | 40.85 |
| Solyc01g050040.2.1 | Tomato | nucleus | 39.52 | 39.38 |
| CDY50031 | Canola | cytosol | 38.83 | 38.97 |
| Zm00001d010635_P001 | Maize | nucleus | 41.24 | 38.46 |
| CDY11934 | Canola | nucleus | 84.54 | 37.73 |
| CDY36069 | Canola | cytosol | 27.84 | 37.33 |
| Os05t0488800-01 | Rice | nucleus | 41.24 | 37.15 |
| Os03t0812200-01 | Rice | nucleus | 46.74 | 36.86 |
| Zm00001d038528_P001 | Maize | cytosol | 40.89 | 35.74 |
| CDX82271 | Canola | cytosol | 26.12 | 35.68 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 40.21 | 35.24 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 40.21 | 35.24 |
| Zm00001d013005_P002 | Maize | nucleus | 44.67 | 35.04 |
| CDY28208 | Canola | cytosol | 27.84 | 34.91 |
| KXG37275 | Sorghum | nucleus | 45.02 | 34.2 |
| CDY56081 | Canola | nucleus | 27.84 | 33.89 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 46.74 | 33.83 |
| CDY72364 | Canola | cytosol | 25.77 | 33.78 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 45.7 | 33.42 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 46.39 | 33.42 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 46.39 | 33.42 |
| KXG22238 | Sorghum | plastid | 42.61 | 31.88 |
| CDX75998 | Canola | nucleus | 20.62 | 31.25 |
| HORVU1Hr1G068950.2 | Barley | golgi | 40.55 | 30.57 |
| CDY23878 | Canola | mitochondrion, nucleus | 29.55 | 28.2 |
| CDY22483 | Canola | mitochondrion | 29.21 | 28.05 |
| CDY27204 | Canola | mitochondrion, nucleus | 29.21 | 27.24 |
| CDY35437 | Canola | mitochondrion, nucleus | 29.21 | 26.81 |
| CDX79968 | Canola | mitochondrion, nucleus | 27.15 | 26.6 |
| CDX72127 | Canola | mitochondrion | 28.87 | 26.58 |
| CDY33437 | Canola | cytosol | 29.55 | 26.54 |
| CDY32333 | Canola | cytosol | 21.31 | 26.38 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 29.21 | 26.32 |
| CDY22790 | Canola | nucleus | 24.4 | 26.3 |
| CDY24592 | Canola | nucleus | 28.52 | 25.86 |
| CDY68603 | Canola | cytosol | 20.62 | 24.79 |
| CDX94665 | Canola | nucleus | 19.93 | 24.68 |
| CDX74533 | Canola | cytosol | 24.4 | 24.32 |
| CDY23599 | Canola | golgi, mitochondrion | 48.8 | 23.32 |
| CDY53450 | Canola | cytosol | 25.43 | 22.98 |
| CDX80258 | Canola | plastid | 27.84 | 22.82 |
| CDX94901 | Canola | cytosol | 24.4 | 22.61 |
| CDY01669 | Canola | plastid | 24.4 | 21.98 |
| CDY42507 | Canola | cytosol | 25.43 | 21.83 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.31 | 21.38 |
| CDY61251 | Canola | cytosol | 25.77 | 20.78 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.31 | 20.74 |
| CDX88709 | Canola | cytosol, plastid | 26.8 | 19.8 |
| CDX99105 | Canola | cytosol, plastid | 21.99 | 19.75 |
| CDY33046 | Canola | plastid | 23.02 | 19.59 |
| CDY20473 | Canola | nucleus, plastid | 22.34 | 19.46 |
| CDY48679 | Canola | cytosol, plastid | 21.99 | 19.16 |
| CDX74839 | Canola | cytosol, plastid | 20.62 | 18.52 |
| CDY07641 | Canola | nucleus | 23.71 | 18.45 |
| CDY24951 | Canola | nucleus | 23.71 | 18.4 |
| CDX78323 | Canola | cytosol | 15.46 | 15.62 |
| CDY69134 | Canola | cytosol | 15.12 | 15.12 |
| CDY58938 | Canola | nucleus | 22.34 | 14.74 |
| CDX69496 | Canola | cytosol | 14.43 | 14.58 |
| CDY03622 | Canola | nucleus | 22.34 | 14.57 |
| CDX69973 | Canola | cytosol | 17.87 | 14.44 |
| CDY21513 | Canola | cytosol | 17.53 | 14.33 |
| CDY01221 | Canola | cytosol | 10.65 | 14.22 |
| CDY34722 | Canola | cytosol | 17.87 | 13.33 |
| CDY34721 | Canola | cytosol | 17.87 | 13.33 |
| CDY26465 | Canola | cytosol | 15.12 | 12.98 |
| CDX90972 | Canola | cytosol | 14.43 | 12.54 |
| CDY02194 | Canola | peroxisome | 16.84 | 12.31 |
| CDY51628 | Canola | peroxisome | 16.84 | 12.07 |
| CDX85531 | Canola | cytosol | 14.09 | 11.95 |
Protein Annotations
| EnsemblPlants:CDY46577 | EnsemblPlantsGene:GSBRNA2T00085819001 | Gene3D:3.30.40.10 | GO:A0A078I924 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY46577 | ProteinID:CDY46577.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE9450 | UniProt:A0A078I924 | MapMan:35.1 | : | : | : |
Description
BnaCnng13990DBnaCnng13990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I924]
Coordinates
chrLK032676:+:160738..162549
Molecular Weight (calculated)
32445.4 Da
IEP (calculated)
5.672
GRAVY (calculated)
-0.478
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETMAARYW CHMCSQMVNP VTESEIKCPF CQSGFIEEMS ILLGMMTRRH GGEIDLDREF ESLLRRRRRS SGNILQLLQG IRAGIASEYD TSDRESNRVI
101: MINPLNQSLV VQGQQAQSSH PALTSLGDYF IGPGLDLLLQ HLAENDPNRQ GTPPARKEVV DALPTVKITE PLLQCSVCLD EFEKGVEAKE MPCKHKFHVK
201: CIVPWLELHS SCPVCRFELP SAESKVETEE PTRTRTTIPE SSNGNVVENV ERGREDDARS GNGRRFSFSW PFSGLFSSSS SSSSGSSGSS R
101: MINPLNQSLV VQGQQAQSSH PALTSLGDYF IGPGLDLLLQ HLAENDPNRQ GTPPARKEVV DALPTVKITE PLLQCSVCLD EFEKGVEAKE MPCKHKFHVK
201: CIVPWLELHS SCPVCRFELP SAESKVETEE PTRTRTTIPE SSNGNVVENV ERGREDDARS GNGRRFSFSW PFSGLFSSSS SSSSGSSGSS R
001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
Arabidopsis Description
ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.