Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07641 | Canola | nucleus | 96.0 | 96.26 |
| Bra000143.1-P | Field mustard | nucleus | 96.0 | 96.0 |
| CDX74839 | Canola | cytosol, plastid | 70.13 | 81.17 |
| CDY20473 | Canola | nucleus, plastid | 72.27 | 81.14 |
| AT2G39720.2 | Thale cress | nucleus | 85.07 | 79.55 |
| Os03t0271600-01 | Rice | plastid | 41.33 | 55.56 |
| Zm00001d047824_P001 | Maize | plastid | 40.53 | 54.68 |
| EER95109 | Sorghum | plastid | 40.0 | 54.55 |
| Zm00001d028590_P001 | Maize | plastid | 40.27 | 54.32 |
| TraesCS4D01G209500.1 | Wheat | plastid | 40.27 | 53.93 |
| TraesCS4B01G209100.1 | Wheat | plastid | 40.27 | 53.93 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 40.27 | 53.93 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 43.2 | 51.27 |
| GSMUA_Achr10P... | Banana | mitochondrion | 44.8 | 49.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 43.2 | 46.15 |
| Os05t0110000-01 | Rice | mitochondrion | 40.27 | 45.35 |
| Zm00001d035677_P001 | Maize | plastid | 41.87 | 45.11 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 46.4 | 45.08 |
| CDY53450 | Canola | cytosol | 38.4 | 44.72 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 38.93 | 44.38 |
| Os01t0972000-01 | Rice | nucleus | 39.47 | 44.31 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 40.27 | 43.9 |
| TraesCS3B01G595200.1 | Wheat | cytosol | 46.4 | 43.61 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 41.87 | 43.37 |
| CDX80258 | Canola | plastid | 40.8 | 43.1 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 40.27 | 42.9 |
| KRH73053 | Soybean | nucleus | 44.27 | 42.46 |
| CDY61251 | Canola | cytosol | 40.53 | 42.11 |
| TraesCS1B01G036900.1 | Wheat | cytosol | 44.8 | 42.11 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 24.8 | 42.08 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 44.8 | 41.79 |
| KRH15082 | Soybean | nucleus | 42.4 | 41.62 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 44.27 | 41.6 |
| EES17560 | Sorghum | plastid | 45.6 | 41.4 |
| CDY48679 | Canola | cytosol, plastid | 36.8 | 41.32 |
| GSMUA_Achr10P... | Banana | mitochondrion | 44.27 | 41.29 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 44.0 | 41.15 |
| CDX88709 | Canola | cytosol, plastid | 42.13 | 40.1 |
| Zm00001d011076_P001 | Maize | plastid | 41.07 | 39.79 |
| CDY33046 | Canola | plastid | 36.27 | 39.77 |
| CDX99105 | Canola | cytosol, plastid | 33.87 | 39.2 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 39.73 | 38.5 |
| GSMUA_Achr10P... | Banana | nucleus | 28.27 | 37.59 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 38.93 | 37.24 |
| CDY36069 | Canola | cytosol | 18.13 | 31.34 |
| CDY72364 | Canola | cytosol | 18.4 | 31.08 |
| CDX82271 | Canola | cytosol | 17.6 | 30.99 |
| CDX75998 | Canola | nucleus | 14.67 | 28.65 |
| CDX94665 | Canola | nucleus | 17.6 | 28.09 |
| CDY22483 | Canola | mitochondrion | 22.4 | 27.72 |
| CDY68603 | Canola | cytosol | 17.87 | 27.69 |
| CDX74533 | Canola | cytosol | 21.33 | 27.4 |
| CDY32333 | Canola | cytosol | 17.07 | 27.23 |
| CDY33437 | Canola | cytosol | 23.47 | 27.16 |
| CDY35437 | Canola | mitochondrion, nucleus | 22.93 | 27.13 |
| CDY27204 | Canola | mitochondrion, nucleus | 22.13 | 26.6 |
| CDY24592 | Canola | nucleus | 22.67 | 26.48 |
| CDX72127 | Canola | mitochondrion | 22.13 | 26.27 |
| CDX79968 | Canola | mitochondrion, nucleus | 20.53 | 25.93 |
| CDY01669 | Canola | plastid | 22.13 | 25.7 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 22.13 | 25.7 |
| CDY23878 | Canola | mitochondrion, nucleus | 20.8 | 25.57 |
| CDY10554 | Canola | cytosol | 20.27 | 24.92 |
| CDY22790 | Canola | nucleus | 17.87 | 24.81 |
| CDY56081 | Canola | nucleus | 15.2 | 23.85 |
| CDY50031 | Canola | cytosol | 18.4 | 23.79 |
| CDY46577 | Canola | nucleus | 18.4 | 23.71 |
| CDY56022 | Canola | nucleus | 19.73 | 23.64 |
| CDX94901 | Canola | cytosol | 19.73 | 23.57 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 17.87 | 23.1 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 18.13 | 22.74 |
| CDY26096 | Canola | nucleus | 17.6 | 22.45 |
| CDY56080 | Canola | cytosol | 16.8 | 22.18 |
| CDX92768 | Canola | nucleus | 17.87 | 21.68 |
| CDY42507 | Canola | cytosol | 19.47 | 21.53 |
| CDY08249 | Canola | cytosol | 18.93 | 21.19 |
| CDY43991 | Canola | nucleus | 17.33 | 21.04 |
| CDY42740 | Canola | nucleus | 17.87 | 20.81 |
| CDX92770 | Canola | nucleus | 17.87 | 20.68 |
| CDY32791 | Canola | nucleus | 19.2 | 20.45 |
| CDY28208 | Canola | cytosol | 11.73 | 18.97 |
| CDY01221 | Canola | cytosol | 10.67 | 18.35 |
| CDX89343 | Canola | cytosol, mitochondrion | 17.07 | 18.18 |
| CDX94342 | Canola | mitochondrion, nucleus | 18.13 | 17.57 |
| CDX78323 | Canola | cytosol | 13.33 | 17.36 |
| CDY03622 | Canola | nucleus | 20.53 | 17.26 |
| CDY58938 | Canola | nucleus | 20.27 | 17.23 |
| CDY69134 | Canola | cytosol | 13.33 | 17.18 |
| CDY34721 | Canola | cytosol | 15.73 | 15.13 |
| CDY34722 | Canola | cytosol | 15.2 | 14.62 |
| CDY21513 | Canola | cytosol | 13.87 | 14.61 |
| CDY26465 | Canola | cytosol | 13.07 | 14.45 |
| CDX69973 | Canola | cytosol | 13.87 | 14.44 |
| CDY02194 | Canola | peroxisome | 14.93 | 14.07 |
| CDY51628 | Canola | peroxisome | 15.2 | 14.04 |
| CDX90972 | Canola | cytosol | 12.0 | 13.43 |
| CDX69496 | Canola | cytosol | 10.13 | 13.19 |
| CDX85531 | Canola | cytosol | 11.47 | 12.54 |
| CDY11934 | Canola | nucleus | 20.53 | 11.81 |
| CDY23599 | Canola | golgi, mitochondrion | 17.07 | 10.51 |
Protein Annotations
| EnsemblPlants:CDY24951 | EnsemblPlantsGene:GSBRNA2T00028747001 | Gene3D:3.30.40.10 | GO:A0A078GHV0 | InterPro:DUF1117 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44274 | PANTHER:PTHR44274:SF3 | PFAM:PF06547 |
| PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | ProteinID:CDY24951 | ProteinID:CDY24951.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF4231 | UniProt:A0A078GHV0 | MapMan:35.1 | : |
Description
BnaC03g22210DBnaC03g22210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHV0]
Coordinates
chrLK032166:+:464591..466050
Molecular Weight (calculated)
40275.8 Da
IEP (calculated)
7.649
GRAVY (calculated)
-0.548
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSGSYWCY SCSRFVWVSD SISCPDCDGG FLEHIQQTLD FTPPSSFLRH HRSPTRFPPP SSSSSTMHTA ENSPTPPPTV TRTRSNSSNR SPNPVIVLRG
101: GSNPSESAFQ MYYDDGTDSG LRPLPPSMTE FLLGSGFDRL LDQISQIELT ANNNNNNSCD NPPASKSAVE ALPLIEIDPT HLESDSQSHC AVCKENFALK
201: SAAREMPCNH IYHPDCILPW LAIRNSCPVC RHELPSGDDG GGGGAVANEE EEDSAAGLTI WRLPGGGFAV GRIPGGLRGG DRMMPVVYTE VDGGRLGDER
301: LPRRVAWGSR RGGREGGGGS RERSGGFAGR IMRLFGCFSG SSGSIAAASG SGSRSTRRSS SSFSMFRTAS SRRRR
101: GSNPSESAFQ MYYDDGTDSG LRPLPPSMTE FLLGSGFDRL LDQISQIELT ANNNNNNSCD NPPASKSAVE ALPLIEIDPT HLESDSQSHC AVCKENFALK
201: SAAREMPCNH IYHPDCILPW LAIRNSCPVC RHELPSGDDG GGGGAVANEE EEDSAAGLTI WRLPGGGFAV GRIPGGLRGG DRMMPVVYTE VDGGRLGDER
301: LPRRVAWGSR RGGREGGGGS RERSGGFAGR IMRLFGCFSG SSGSIAAASG SGSRSTRRSS SSFSMFRTAS SRRRR
001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
Arabidopsis Description
RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.