Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY06478 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | CDY06478 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009323.1-P | Field mustard | cytosol | 98.33 | 93.4 |
| CDY21513 | Canola | cytosol | 86.11 | 87.08 |
| CDX78323 | Canola | cytosol | 53.61 | 67.01 |
| CDY69134 | Canola | cytosol | 53.06 | 65.64 |
| AT5G08139.1 | Thale cress | cytosol | 63.89 | 61.17 |
| CDY02194 | Canola | peroxisome | 44.72 | 40.45 |
| CDY51628 | Canola | peroxisome | 44.17 | 39.16 |
| KRH56750 | Soybean | cytosol | 33.89 | 35.67 |
| KRH03189 | Soybean | nucleus | 33.89 | 34.37 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 11.39 | 33.06 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 36.39 | 29.84 |
| PGSC0003DMT400063293 | Potato | nucleus | 34.44 | 28.7 |
| Solyc03g114680.2.1 | Tomato | nucleus | 34.72 | 25.1 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 26.94 | 24.49 |
| CDX75998 | Canola | nucleus | 11.94 | 22.4 |
| CDX69496 | Canola | cytosol | 17.5 | 21.88 |
| CDY26465 | Canola | cytosol | 20.56 | 21.83 |
| CDY32333 | Canola | cytosol | 14.17 | 21.7 |
| CDY72364 | Canola | cytosol | 13.33 | 21.62 |
| CDX82271 | Canola | cytosol | 12.78 | 21.6 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 18.33 | 21.5 |
| CDX94665 | Canola | nucleus | 13.61 | 20.85 |
| CDY34722 | Canola | cytosol | 22.5 | 20.77 |
| CDY68603 | Canola | cytosol | 13.89 | 20.66 |
| CDY34721 | Canola | cytosol | 22.22 | 20.51 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 16.39 | 20.34 |
| CDY36069 | Canola | cytosol | 12.22 | 20.28 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.0 | 20.07 |
| OQU85475 | Sorghum | cytosol | 17.78 | 20.0 |
| Os08t0487500-01 | Rice | plastid | 15.0 | 19.93 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.94 | 19.87 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 15.83 | 19.72 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 14.72 | 19.7 |
| Zm00001d051736_P001 | Maize | cytosol | 18.06 | 19.7 |
| EES14331 | Sorghum | plastid | 15.83 | 19.45 |
| TraesCS7B01G144100.1 | Wheat | plastid | 14.44 | 19.33 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 16.67 | 19.29 |
| CDX79968 | Canola | mitochondrion, nucleus | 15.83 | 19.19 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 15.83 | 19.06 |
| CDY23878 | Canola | mitochondrion, nucleus | 15.83 | 18.69 |
| CDX90972 | Canola | cytosol | 17.22 | 18.51 |
| CDY22483 | Canola | mitochondrion | 15.56 | 18.48 |
| EER90075 | Sorghum | nucleus | 15.56 | 18.48 |
| CDX85531 | Canola | cytosol | 17.5 | 18.37 |
| CDY35437 | Canola | mitochondrion, nucleus | 16.11 | 18.3 |
| CDY27204 | Canola | mitochondrion, nucleus | 15.83 | 18.27 |
| CDY28208 | Canola | cytosol | 11.67 | 18.1 |
| CDY46577 | Canola | nucleus | 14.44 | 17.87 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 25.28 | 17.43 |
| CDX72127 | Canola | mitochondrion | 15.28 | 17.41 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 17.5 | 17.31 |
| Zm00001d046663_P001 | Maize | cytosol | 14.17 | 17.11 |
| CDY22790 | Canola | nucleus | 12.78 | 17.04 |
| CDX94901 | Canola | cytosol | 14.72 | 16.88 |
| CDX92768 | Canola | nucleus | 14.44 | 16.83 |
| CDY42740 | Canola | nucleus | 15.0 | 16.77 |
| CDY56081 | Canola | nucleus | 11.11 | 16.74 |
| CDY01221 | Canola | cytosol | 10.0 | 16.51 |
| CDY50031 | Canola | cytosol | 13.06 | 16.21 |
| CDY24592 | Canola | nucleus | 14.44 | 16.2 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 14.44 | 16.1 |
| CDX92770 | Canola | nucleus | 14.44 | 16.05 |
| CDY56080 | Canola | cytosol | 12.5 | 15.85 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.94 | 15.76 |
| CDY32791 | Canola | nucleus | 15.28 | 15.62 |
| CDY43991 | Canola | nucleus | 13.33 | 15.53 |
| CDY33437 | Canola | cytosol | 13.89 | 15.43 |
| CDY61251 | Canola | cytosol | 15.28 | 15.24 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 14.72 | 15.23 |
| CDY53450 | Canola | cytosol | 13.61 | 15.22 |
| Zm00001d053704_P001 | Maize | cytosol | 15.0 | 15.17 |
| CDX99105 | Canola | cytosol, plastid | 13.61 | 15.12 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 13.61 | 15.03 |
| CDY20473 | Canola | nucleus, plastid | 13.89 | 14.97 |
| CDY26096 | Canola | nucleus | 12.22 | 14.97 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 13.61 | 14.85 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 13.61 | 14.8 |
| CDY56022 | Canola | nucleus | 12.78 | 14.7 |
| CDX80258 | Canola | plastid | 14.44 | 14.65 |
| CDY10554 | Canola | cytosol | 12.22 | 14.43 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 14.72 | 14.32 |
| CDY48679 | Canola | cytosol, plastid | 13.06 | 14.07 |
| CDX74533 | Canola | cytosol | 11.39 | 14.04 |
| CDX88709 | Canola | cytosol, plastid | 15.28 | 13.96 |
| CDX89343 | Canola | cytosol, mitochondrion | 13.61 | 13.92 |
| CDY07641 | Canola | nucleus | 14.44 | 13.9 |
| CDX74839 | Canola | cytosol, plastid | 12.5 | 13.89 |
| CDY24951 | Canola | nucleus | 14.44 | 13.87 |
| CDY42507 | Canola | cytosol | 13.06 | 13.86 |
| CDY58938 | Canola | nucleus | 16.94 | 13.83 |
| CDX94342 | Canola | mitochondrion, nucleus | 14.72 | 13.7 |
| CDY01669 | Canola | plastid | 12.22 | 13.62 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 15.0 | 13.47 |
| CDY03622 | Canola | nucleus | 16.67 | 13.45 |
| CDY08249 | Canola | cytosol | 12.5 | 13.43 |
| Os02t0191500-01 | Rice | nucleus | 13.61 | 13.07 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 13.61 | 12.79 |
| CDY33046 | Canola | plastid | 11.94 | 12.57 |
| CDY11934 | Canola | nucleus | 15.56 | 8.59 |
| CDY23599 | Canola | golgi, mitochondrion | 13.33 | 7.88 |
Protein Annotations
| EnsemblPlants:CDX69973 | EnsemblPlantsGene:GSBRNA2T00136060001 | Gene3D:3.30.40.10 | GO:A0A078C4L9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX69973 | ProteinID:CDX69973.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDB734 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA10g23220D
Coordinates
chrLK031790:-:2525243..2526499
Molecular Weight (calculated)
40297.7 Da
IEP (calculated)
3.696
GRAVY (calculated)
-0.600
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSHQRVEQ SQVTLPRDDD NEGTVSRDVI VGNCDVVVEL GLGSGTVFIE NIDSDVVDVN NLNGFDEPDD DDLELRGIAS MGSQIRLITI ESGSDDDDDH
101: HENEREVWGI DLNDDEDVYD DEDDDDDDVN VTIPLCWDSL QVEDRGVAAE EFDWEEVDGG GGLVDEREIL TGFAEIDDAD IDEDTSVSIS ISPMISSEGL
201: DTGERKEEAA NLEWEVLLNS HTLEINFDVG NREIFLTGDN EVNINAPEYD MLFEQFSQAG LTNLRRFPPA SRSFIKDLPM VQLDVEKDEG AVCAVCKDEM
301: DVGTEAVGLP CDHKYHTECI VPWLKTRNTC PVCRYELPTD STDYERRKSQ RTTTSSNNIW
101: HENEREVWGI DLNDDEDVYD DEDDDDDDVN VTIPLCWDSL QVEDRGVAAE EFDWEEVDGG GGLVDEREIL TGFAEIDDAD IDEDTSVSIS ISPMISSEGL
201: DTGERKEEAA NLEWEVLLNS HTLEINFDVG NREIFLTGDN EVNINAPEYD MLFEQFSQAG LTNLRRFPPA SRSFIKDLPM VQLDVEKDEG AVCAVCKDEM
301: DVGTEAVGLP CDHKYHTECI VPWLKTRNTC PVCRYELPTD STDYERRKSQ RTTTSSNNIW
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.