Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY06478 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | CDY06478 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005970.1-P | Field mustard | cytosol | 95.83 | 95.17 |
| CDY69134 | Canola | cytosol | 92.36 | 91.41 |
| CDY21513 | Canola | cytosol | 67.71 | 54.78 |
| CDX69973 | Canola | cytosol | 67.01 | 53.61 |
| AT5G08139.1 | Thale cress | cytosol | 64.93 | 49.73 |
| CDY02194 | Canola | peroxisome | 48.96 | 35.43 |
| CDY51628 | Canola | peroxisome | 48.61 | 34.48 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 14.58 | 33.87 |
| KRH56750 | Soybean | cytosol | 32.99 | 27.78 |
| KRH03189 | Soybean | nucleus | 33.68 | 27.32 |
| CDX82271 | Canola | cytosol | 16.32 | 22.07 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 33.33 | 21.87 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 29.51 | 21.46 |
| CDX69496 | Canola | cytosol | 21.18 | 21.18 |
| CDY72364 | Canola | cytosol | 16.32 | 21.17 |
| PGSC0003DMT400063293 | Potato | nucleus | 31.25 | 20.83 |
| CDY36069 | Canola | cytosol | 15.62 | 20.74 |
| CDY26465 | Canola | cytosol | 24.31 | 20.65 |
| CDX94665 | Canola | nucleus | 15.97 | 19.57 |
| CDY68603 | Canola | cytosol | 16.32 | 19.42 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 20.49 | 19.22 |
| CDY32333 | Canola | cytosol | 15.62 | 19.15 |
| TraesCS7D01G246300.1 | Wheat | plastid | 17.71 | 18.96 |
| Solyc03g114680.2.1 | Tomato | nucleus | 32.64 | 18.88 |
| CDX75998 | Canola | nucleus | 12.5 | 18.75 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 17.36 | 18.59 |
| CDY34722 | Canola | cytosol | 25.0 | 18.46 |
| Os08t0487500-01 | Rice | plastid | 17.36 | 18.45 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 18.4 | 18.28 |
| TraesCS7B01G144100.1 | Wheat | plastid | 17.01 | 18.22 |
| OQU85475 | Sorghum | cytosol | 20.14 | 18.12 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 18.06 | 17.99 |
| CDY34721 | Canola | cytosol | 23.96 | 17.69 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 19.1 | 17.68 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 18.75 | 17.59 |
| Zm00001d051736_P001 | Maize | cytosol | 20.14 | 17.58 |
| EES14331 | Sorghum | plastid | 17.71 | 17.41 |
| CDX85531 | Canola | cytosol | 20.49 | 17.2 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 17.71 | 17.06 |
| EER90075 | Sorghum | nucleus | 17.71 | 16.83 |
| Zm00001d046663_P001 | Maize | cytosol | 17.36 | 16.78 |
| CDY22790 | Canola | nucleus | 15.62 | 16.67 |
| CDX90972 | Canola | cytosol | 19.1 | 16.42 |
| CDY22483 | Canola | mitochondrion | 17.01 | 16.17 |
| CDX79968 | Canola | mitochondrion, nucleus | 15.97 | 15.49 |
| CDY46577 | Canola | nucleus | 15.62 | 15.46 |
| CDY35437 | Canola | mitochondrion, nucleus | 17.01 | 15.46 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 19.44 | 15.38 |
| CDY24592 | Canola | nucleus | 17.01 | 15.26 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 18.4 | 15.23 |
| CDX92768 | Canola | nucleus | 16.32 | 15.21 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 17.01 | 15.17 |
| CDY01221 | Canola | cytosol | 11.46 | 15.14 |
| CDY23878 | Canola | mitochondrion, nucleus | 15.97 | 15.08 |
| CDY42740 | Canola | nucleus | 16.67 | 14.91 |
| CDY33437 | Canola | cytosol | 16.67 | 14.81 |
| CDX92770 | Canola | nucleus | 16.67 | 14.81 |
| CDY32791 | Canola | nucleus | 18.06 | 14.77 |
| CDY27204 | Canola | mitochondrion, nucleus | 15.97 | 14.74 |
| CDY20473 | Canola | nucleus, plastid | 17.01 | 14.67 |
| CDY28208 | Canola | cytosol | 11.81 | 14.66 |
| CDY56081 | Canola | nucleus | 12.15 | 14.64 |
| Zm00001d053704_P001 | Maize | cytosol | 18.06 | 14.61 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 18.75 | 14.59 |
| CDY42507 | Canola | cytosol | 17.01 | 14.45 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 16.32 | 14.42 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 26.04 | 14.37 |
| CDY26096 | Canola | nucleus | 14.58 | 14.29 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 16.32 | 14.24 |
| CDX72127 | Canola | mitochondrion | 15.62 | 14.24 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 19.1 | 14.21 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 16.32 | 14.2 |
| CDX99105 | Canola | cytosol, plastid | 15.97 | 14.2 |
| CDX94901 | Canola | cytosol | 15.28 | 14.01 |
| CDX74839 | Canola | cytosol, plastid | 15.28 | 13.58 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 18.75 | 13.47 |
| CDY56022 | Canola | nucleus | 14.58 | 13.42 |
| CDY07641 | Canola | nucleus | 17.36 | 13.37 |
| Os02t0191500-01 | Rice | nucleus | 17.36 | 13.33 |
| CDY24951 | Canola | nucleus | 17.36 | 13.33 |
| CDY61251 | Canola | cytosol | 16.32 | 13.02 |
| CDY43991 | Canola | nucleus | 13.89 | 12.95 |
| CDY03622 | Canola | nucleus | 19.79 | 12.78 |
| CDY58938 | Canola | nucleus | 19.44 | 12.7 |
| CDY56080 | Canola | cytosol | 12.5 | 12.68 |
| CDX74533 | Canola | cytosol | 12.85 | 12.67 |
| CDX94342 | Canola | mitochondrion, nucleus | 17.01 | 12.66 |
| CDY08249 | Canola | cytosol | 14.58 | 12.54 |
| CDX89343 | Canola | cytosol, mitochondrion | 15.28 | 12.5 |
| CDY10554 | Canola | cytosol | 13.19 | 12.46 |
| CDY53450 | Canola | cytosol | 13.89 | 12.42 |
| CDY50031 | Canola | cytosol | 12.5 | 12.41 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 16.32 | 12.27 |
| CDX80258 | Canola | plastid | 14.93 | 12.11 |
| CDY01669 | Canola | plastid | 13.54 | 12.07 |
| CDY48679 | Canola | cytosol, plastid | 13.89 | 11.98 |
| CDX88709 | Canola | cytosol, plastid | 15.62 | 11.42 |
| CDY33046 | Canola | plastid | 13.19 | 11.11 |
| CDY11934 | Canola | nucleus | 17.36 | 7.67 |
| CDY23599 | Canola | golgi, mitochondrion | 13.89 | 6.57 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078CT54 |
| EnsemblPlants:CDX78323 | ProteinID:CDX78323 | ProteinID:CDX78323.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:GSBRNA2T00129680001 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR44679 | SMART:SM00184 | SMART:SM00744 | SUPFAM:SSF57850 | UniParc:UPI0004EE504E | InterPro:Znf_RING |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaA03g02350D
Coordinates
chrLK031815:+:194029..195281
Molecular Weight (calculated)
32437.8 Da
IEP (calculated)
3.777
GRAVY (calculated)
-0.606
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSQQPQVT LPHDNEVTES RGAVMELESE SGSCFIENID HDSDSDVNNL CDFAESDDDS GIEFRDIRLV TVESGSDDDD DDPEDEREIW GIDLNESDVY
101: DDDVSVTIHS LEVEDLGRAA VELDWEEVDG GADVSPMLSL EDLAREERRD GSGNLEWQVL MNSHTLEINF DAENRELYIV GGDQYDLFFE QFAQAGITNL
201: RFPPASEAFV KNLPTVELGV DNDDCAVCKD EMSVGSRGVV LMLPCNHKYH GECIVPWLET RNTCPVCRYE LPTDDVDYER RKSHIRTS
101: DDDVSVTIHS LEVEDLGRAA VELDWEEVDG GADVSPMLSL EDLAREERRD GSGNLEWQVL MNSHTLEINF DAENRELYIV GGDQYDLFFE QFAQAGITNL
201: RFPPASEAFV KNLPTVELGV DNDDCAVCKD EMSVGSRGVV LMLPCNHKYH GECIVPWLET RNTCPVCRYE LPTDDVDYER RKSHIRTS
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.