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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS5A01G382800.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G08139.1 TraesCS5A01G382800.2 AT4G14640.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G160300.1 Wheat nucleus 82.04 94.54
HORVU6Hr1G034800.1 Barley cytosol, nucleus 69.08 74.86
TraesCS6B01G318600.1 Wheat cytosol, plastid 16.71 21.82
Os02t0191500-01 Rice nucleus 20.2 21.6
TraesCS4B01G209100.1 Wheat plastid 14.46 20.71
TraesCS7B01G144100.1 Wheat plastid 13.72 20.45
Zm00001d053704_P001 Maize cytosol 17.71 19.94
TraesCS3B01G474100.1 Wheat mitochondrion 14.21 19.79
OQU84547 Sorghum cytoskeleton, cytosol, nucleus 18.7 19.38
Bra008671.1-P Field mustard nucleus 13.47 18.82
CDX69496 Canola cytosol 13.47 18.75
CDX78323 Canola cytosol 13.47 18.75
Bra005970.1-P Field mustard cytosol 13.22 18.28
TraesCS7B01G293600.1 Wheat cytosol 14.71 17.88
TraesCS3B01G595200.1 Wheat cytosol 17.46 17.54
CDY69134 Canola cytosol 12.72 17.53
TraesCS4B01G174800.1 Wheat cytosol 15.21 17.43
TraesCS3B01G361000.1 Wheat cytosol 14.71 17.2
CDY26465 Canola cytosol 14.46 17.11
GSMUA_Achr8P24510_001 Banana cytosol 16.21 16.41
TraesCS1B01G316300.1 Wheat nucleus 13.47 16.27
TraesCS1B01G036900.1 Wheat cytosol 15.96 16.04
TraesCS1B01G179000.1 Wheat cytosol, mitochondrion, plastid, vacuole 14.71 15.99
Solyc02g089410.2.1 Tomato nucleus 12.97 15.9
TraesCS7B01G074800.1 Wheat mitochondrion 12.72 15.84
KRH56750 Soybean cytosol 13.47 15.79
KRH03189 Soybean nucleus 13.97 15.77
PGSC0003DMT400003515 Potato nucleus 14.46 15.63
KRH18313 Soybean nucleus 14.46 15.51
TraesCS3B01G218400.1 Wheat cytosol 14.21 15.32
AT5G15820.1 Thale cress cytosol 13.22 15.23
CDX69973 Canola cytosol 13.47 15.0
CDY21513 Canola cytosol 13.22 14.89
VIT_17s0000g04730.t01 Wine grape nucleus 16.21 14.81
KRG93748 Soybean nucleus, plastid 13.72 14.47
CDY34722 Canola cytosol 13.97 14.36
CDY34721 Canola cytosol 13.97 14.36
Solyc02g065650.1.1 Tomato cytosol, nucleus, plastid 14.21 14.36
PGSC0003DMT400063293 Potato nucleus 15.46 14.35
VIT_14s0083g00710.t01 Wine grape nucleus 13.97 14.32
Bra009323.1-P Field mustard cytosol 13.47 14.25
TraesCS6B01G361600.1 Wheat mitochondrion 11.97 14.24
Bra021467.1-P Field mustard nucleus 13.72 14.1
PGSC0003DMT400068309 Potato cytosol 13.97 14.07
CDX85531 Canola cytosol 11.72 13.7
TraesCS5B01G480100.1 Wheat nucleus 13.72 13.68
Solyc03g114680.2.1 Tomato nucleus 16.96 13.65
CDY02194 Canola peroxisome 13.22 13.32
AT5G08139.1 Thale cress cytosol 12.47 13.3
AT3G02340.2 Thale cress cytosol 13.47 13.2
CDX90972 Canola cytosol 10.97 13.13
CDY51628 Canola peroxisome 13.22 13.05
Bra013006.1-P Field mustard nucleus 13.22 12.71
AT5G60820.1 Thale cress cytosol 13.22 12.65
TraesCS5B01G144700.1 Wheat nucleus 15.96 12.55
Bra023539.1-P Field mustard cytoskeleton, cytosol, nucleus 11.97 12.09
GSMUA_Achr3P06300_001 Banana cytosol 15.21 11.69
Protein Annotations
EnsemblPlants:TraesCS6B01G198800.1EnsemblPlantsGene:TraesCS6B01G198800Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44679PFAM:PF13639PFscan:PS50089SEG:segSMART:SM00184
SUPFAM:SSF57850MapMan:35.1::::
Description
No Description!
Coordinates
chr6B:-:237731774..237734398
Molecular Weight (calculated)
43150.9 Da
IEP (calculated)
3.710
GRAVY (calculated)
-0.721
Length
401 amino acids
Sequence
(BLAST)
001: MADDSDGEGF CADPFEDDSD GGDSCDYRCC CDDDDEGEWS CGAPCDEDDD DINVEEICRD PCDNVVVVDD EDEGEVEEAL CHDDDEGESD GSLCDEDAEG
101: EQLSDDDECE GKGGGFGDDR CDDEDEGKPD GESEDFRENP SNHDEDVGAE VLSGGGGGGF RGGELFVSRF LFSDASDISD SDHSDSEVEE AGGGEGLTPS
201: GFDQTPSPGA FRMAVGVEDS DSDTISTDSD YEDDYEFFKR PASRQAVEGL PEMILSEEEA TCGCAVCKDV FASGQRVVFL PCKHYFHGDC ILPWLAMRST
301: CPVCRYQLPT DDTGSGQRPS HQLRVLLPVG RQGASQQNGS VCDRVQMPPR WVKKECSAVA TEASFSRHAC LRNSGRSGGC ATALAYFVYD SRYASAQILN
401: G
Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.