Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G160300.1 | Wheat | nucleus | 82.04 | 94.54 |
HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 69.08 | 74.86 |
TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.71 | 21.82 |
Os02t0191500-01 | Rice | nucleus | 20.2 | 21.6 |
TraesCS4B01G209100.1 | Wheat | plastid | 14.46 | 20.71 |
TraesCS7B01G144100.1 | Wheat | plastid | 13.72 | 20.45 |
Zm00001d053704_P001 | Maize | cytosol | 17.71 | 19.94 |
TraesCS3B01G474100.1 | Wheat | mitochondrion | 14.21 | 19.79 |
OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 18.7 | 19.38 |
Bra008671.1-P | Field mustard | nucleus | 13.47 | 18.82 |
CDX69496 | Canola | cytosol | 13.47 | 18.75 |
CDX78323 | Canola | cytosol | 13.47 | 18.75 |
Bra005970.1-P | Field mustard | cytosol | 13.22 | 18.28 |
TraesCS7B01G293600.1 | Wheat | cytosol | 14.71 | 17.88 |
TraesCS3B01G595200.1 | Wheat | cytosol | 17.46 | 17.54 |
CDY69134 | Canola | cytosol | 12.72 | 17.53 |
TraesCS4B01G174800.1 | Wheat | cytosol | 15.21 | 17.43 |
TraesCS3B01G361000.1 | Wheat | cytosol | 14.71 | 17.2 |
CDY26465 | Canola | cytosol | 14.46 | 17.11 |
GSMUA_Achr8P24510_001 | Banana | cytosol | 16.21 | 16.41 |
TraesCS1B01G316300.1 | Wheat | nucleus | 13.47 | 16.27 |
TraesCS1B01G036900.1 | Wheat | cytosol | 15.96 | 16.04 |
TraesCS1B01G179000.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 14.71 | 15.99 |
Solyc02g089410.2.1 | Tomato | nucleus | 12.97 | 15.9 |
TraesCS7B01G074800.1 | Wheat | mitochondrion | 12.72 | 15.84 |
KRH56750 | Soybean | cytosol | 13.47 | 15.79 |
KRH03189 | Soybean | nucleus | 13.97 | 15.77 |
PGSC0003DMT400003515 | Potato | nucleus | 14.46 | 15.63 |
KRH18313 | Soybean | nucleus | 14.46 | 15.51 |
TraesCS3B01G218400.1 | Wheat | cytosol | 14.21 | 15.32 |
AT5G15820.1 | Thale cress | cytosol | 13.22 | 15.23 |
CDX69973 | Canola | cytosol | 13.47 | 15.0 |
CDY21513 | Canola | cytosol | 13.22 | 14.89 |
VIT_17s0000g04730.t01 | Wine grape | nucleus | 16.21 | 14.81 |
KRG93748 | Soybean | nucleus, plastid | 13.72 | 14.47 |
CDY34722 | Canola | cytosol | 13.97 | 14.36 |
CDY34721 | Canola | cytosol | 13.97 | 14.36 |
Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 14.21 | 14.36 |
PGSC0003DMT400063293 | Potato | nucleus | 15.46 | 14.35 |
VIT_14s0083g00710.t01 | Wine grape | nucleus | 13.97 | 14.32 |
Bra009323.1-P | Field mustard | cytosol | 13.47 | 14.25 |
TraesCS6B01G361600.1 | Wheat | mitochondrion | 11.97 | 14.24 |
Bra021467.1-P | Field mustard | nucleus | 13.72 | 14.1 |
PGSC0003DMT400068309 | Potato | cytosol | 13.97 | 14.07 |
CDX85531 | Canola | cytosol | 11.72 | 13.7 |
TraesCS5B01G480100.1 | Wheat | nucleus | 13.72 | 13.68 |
Solyc03g114680.2.1 | Tomato | nucleus | 16.96 | 13.65 |
CDY02194 | Canola | peroxisome | 13.22 | 13.32 |
AT5G08139.1 | Thale cress | cytosol | 12.47 | 13.3 |
AT3G02340.2 | Thale cress | cytosol | 13.47 | 13.2 |
CDX90972 | Canola | cytosol | 10.97 | 13.13 |
CDY51628 | Canola | peroxisome | 13.22 | 13.05 |
Bra013006.1-P | Field mustard | nucleus | 13.22 | 12.71 |
AT5G60820.1 | Thale cress | cytosol | 13.22 | 12.65 |
TraesCS5B01G144700.1 | Wheat | nucleus | 15.96 | 12.55 |
Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 11.97 | 12.09 |
GSMUA_Achr3P06300_001 | Banana | cytosol | 15.21 | 11.69 |
Protein Annotations
EnsemblPlants:TraesCS6B01G198800.1 | EnsemblPlantsGene:TraesCS6B01G198800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:237731774..237734398
Molecular Weight (calculated)
43150.9 Da
IEP (calculated)
3.710
GRAVY (calculated)
-0.721
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDSDGEGF CADPFEDDSD GGDSCDYRCC CDDDDEGEWS CGAPCDEDDD DINVEEICRD PCDNVVVVDD EDEGEVEEAL CHDDDEGESD GSLCDEDAEG
101: EQLSDDDECE GKGGGFGDDR CDDEDEGKPD GESEDFRENP SNHDEDVGAE VLSGGGGGGF RGGELFVSRF LFSDASDISD SDHSDSEVEE AGGGEGLTPS
201: GFDQTPSPGA FRMAVGVEDS DSDTISTDSD YEDDYEFFKR PASRQAVEGL PEMILSEEEA TCGCAVCKDV FASGQRVVFL PCKHYFHGDC ILPWLAMRST
301: CPVCRYQLPT DDTGSGQRPS HQLRVLLPVG RQGASQQNGS VCDRVQMPPR WVKKECSAVA TEASFSRHAC LRNSGRSGGC ATALAYFVYD SRYASAQILN
401: G
101: EQLSDDDECE GKGGGFGDDR CDDEDEGKPD GESEDFRENP SNHDEDVGAE VLSGGGGGGF RGGELFVSRF LFSDASDISD SDHSDSEVEE AGGGEGLTPS
201: GFDQTPSPGA FRMAVGVEDS DSDTISTDSD YEDDYEFFKR PASRQAVEGL PEMILSEEEA TCGCAVCKDV FASGQRVVFL PCKHYFHGDC ILPWLAMRST
301: CPVCRYQLPT DDTGSGQRPS HQLRVLLPVG RQGASQQNGS VCDRVQMPPR WVKKECSAVA TEASFSRHAC LRNSGRSGGC ATALAYFVYD SRYASAQILN
401: G
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.