Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56022 | Canola | nucleus | 87.21 | 84.98 |
| CDY08249 | Canola | cytosol | 62.3 | 56.72 |
| CDY26096 | Canola | nucleus | 54.1 | 56.12 |
| AT1G55530.2 | Thale cress | nucleus | 63.28 | 54.99 |
| CDY50031 | Canola | cytosol | 44.92 | 47.24 |
| CDY43991 | Canola | nucleus | 47.21 | 46.6 |
| CDY56080 | Canola | cytosol | 43.28 | 46.48 |
| CDY56081 | Canola | nucleus | 34.75 | 44.35 |
| CDY46577 | Canola | nucleus | 41.97 | 43.99 |
| GSMUA_Achr11P... | Banana | nucleus | 38.03 | 42.96 |
| CDY28208 | Canola | cytosol | 31.15 | 40.95 |
| CDX92768 | Canola | nucleus | 39.67 | 39.16 |
| CDY32791 | Canola | nucleus | 43.61 | 37.78 |
| CDX92770 | Canola | nucleus | 40.0 | 37.65 |
| CDY42740 | Canola | nucleus | 39.67 | 37.58 |
| Os05t0488800-01 | Rice | nucleus | 39.67 | 37.46 |
| Zm00001d010635_P001 | Maize | nucleus | 37.7 | 36.86 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 39.02 | 35.84 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 38.69 | 35.54 |
| CDX89343 | Canola | cytosol, mitochondrion | 40.33 | 34.94 |
| Zm00001d038528_P001 | Maize | cytosol | 38.03 | 34.83 |
| Os03t0812200-01 | Rice | nucleus | 41.31 | 34.15 |
| Zm00001d013005_P002 | Maize | nucleus | 40.66 | 33.42 |
| CDX82271 | Canola | cytosol | 22.95 | 32.86 |
| KXG37275 | Sorghum | nucleus | 40.98 | 32.64 |
| CDX94342 | Canola | mitochondrion, nucleus | 40.98 | 32.3 |
| CDY36069 | Canola | cytosol | 22.95 | 32.26 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 40.98 | 31.41 |
| HORVU1Hr1G068950.2 | Barley | golgi | 39.34 | 31.09 |
| CDY72364 | Canola | cytosol | 22.62 | 31.08 |
| KXG22238 | Sorghum | plastid | 39.34 | 30.85 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 40.66 | 30.85 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 40.66 | 30.69 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 40.66 | 30.69 |
| CDY24592 | Canola | nucleus | 28.52 | 27.1 |
| CDY22790 | Canola | nucleus | 23.93 | 27.04 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 28.52 | 26.93 |
| CDY68603 | Canola | cytosol | 21.31 | 26.86 |
| CDY33437 | Canola | cytosol | 28.2 | 26.54 |
| CDX75998 | Canola | nucleus | 16.39 | 26.04 |
| CDY23878 | Canola | mitochondrion, nucleus | 25.57 | 25.57 |
| CDX94665 | Canola | nucleus | 19.67 | 25.53 |
| CDY32333 | Canola | cytosol | 19.34 | 25.11 |
| CDY22483 | Canola | mitochondrion | 24.59 | 24.75 |
| CDY35437 | Canola | mitochondrion, nucleus | 25.25 | 24.29 |
| CDX79968 | Canola | mitochondrion, nucleus | 23.61 | 24.24 |
| CDY27204 | Canola | mitochondrion, nucleus | 24.59 | 24.04 |
| CDY42507 | Canola | cytosol | 26.56 | 23.89 |
| CDX72127 | Canola | mitochondrion | 24.59 | 23.73 |
| CDY23599 | Canola | golgi, mitochondrion | 47.21 | 23.65 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.97 | 23.1 |
| CDX80258 | Canola | plastid | 26.89 | 23.1 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.97 | 22.41 |
| CDY53450 | Canola | cytosol | 23.61 | 22.36 |
| CDX74533 | Canola | cytosol | 21.31 | 22.26 |
| CDY11934 | Canola | nucleus | 46.89 | 21.93 |
| CDY61251 | Canola | cytosol | 25.9 | 21.88 |
| CDY20473 | Canola | nucleus, plastid | 23.61 | 21.56 |
| CDX99105 | Canola | cytosol, plastid | 21.97 | 20.68 |
| CDX74839 | Canola | cytosol, plastid | 21.97 | 20.68 |
| CDY01669 | Canola | plastid | 21.64 | 20.43 |
| CDY07641 | Canola | nucleus | 24.92 | 20.32 |
| CDY24951 | Canola | nucleus | 24.92 | 20.27 |
| CDX88709 | Canola | cytosol, plastid | 25.9 | 20.05 |
| CDY33046 | Canola | plastid | 22.3 | 19.88 |
| CDY48679 | Canola | cytosol, plastid | 21.31 | 19.46 |
| CDX94901 | Canola | cytosol | 19.34 | 18.79 |
| CDX69496 | Canola | cytosol | 13.77 | 14.58 |
| CDY03622 | Canola | nucleus | 21.31 | 14.57 |
| CDY58938 | Canola | nucleus | 20.98 | 14.51 |
| CDY01221 | Canola | cytosol | 10.16 | 14.22 |
| CDY26465 | Canola | cytosol | 15.08 | 13.57 |
| CDX78323 | Canola | cytosol | 12.46 | 13.19 |
| CDY02194 | Canola | peroxisome | 17.05 | 13.07 |
| CDY69134 | Canola | cytosol | 12.46 | 13.06 |
| CDY51628 | Canola | peroxisome | 17.05 | 12.81 |
| CDY21513 | Canola | cytosol | 14.75 | 12.64 |
| CDX69973 | Canola | cytosol | 14.43 | 12.22 |
| CDY34721 | Canola | cytosol | 15.08 | 11.79 |
| CDY34722 | Canola | cytosol | 15.08 | 11.79 |
| CDX90972 | Canola | cytosol | 12.13 | 11.04 |
| CDX85531 | Canola | cytosol | 11.48 | 10.2 |
Protein Annotations
| EnsemblPlants:CDY10554 | EnsemblPlantsGene:GSBRNA2T00032514001 | Gene3D:3.30.40.10 | GO:A0A078FC92 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY10554 | ProteinID:CDY10554.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EF00A3 | UniProt:A0A078FC92 | MapMan:35.1 | : | : | : |
Description
BnaC03g70600DBnaC03g70600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC92]
Coordinates
chrLK032004:+:327026..328601
Molecular Weight (calculated)
33656.4 Da
IEP (calculated)
4.033
GRAVY (calculated)
-0.692
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEAAVAYW CHMCSRTVDP LMEAEIKCPF CAGGFVEEMA EEEEEEQEHS PNSNSLWAPI LMQLVNDPSL RARNQSADED TQNSEAETEN DVDSQLQEIL
101: RRRRGRRPVS VMHLLDGARE RAGSLIVVSG GSLSEYFIGP GFEALLQRLT DNDPNRYGTP PAQKEAVEAL ATVKIQEGAL QCSVCLDDFE IGVEAKEMPC
201: EHKFHRDCLL PWLELHSSCP VCRYELPSDE TKTETERAEP NGDGGGSESS SFASSQGSEN SDGSHHPEEE EEESDDDGVE LSIPWLLSSL FSSSQDSSNP
301: SSGTH
101: RRRRGRRPVS VMHLLDGARE RAGSLIVVSG GSLSEYFIGP GFEALLQRLT DNDPNRYGTP PAQKEAVEAL ATVKIQEGAL QCSVCLDDFE IGVEAKEMPC
201: EHKFHRDCLL PWLELHSSCP VCRYELPSDE TKTETERAEP NGDGGGSESS SFASSQGSEN SDGSHHPEEE EEESDDDGVE LSIPWLLSSL FSSSQDSSNP
301: SSGTH
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.