Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014684.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX94901 | Canola | cytosol | 79.69 | 48.73 |
| CDY27204 | Canola | mitochondrion, nucleus | 71.88 | 44.23 |
| AT3G56580.1 | Thale cress | mitochondrion | 73.44 | 44.06 |
| CDX72127 | Canola | mitochondrion | 72.4 | 43.99 |
| CDX79968 | Canola | mitochondrion, nucleus | 61.46 | 39.73 |
| CDY23878 | Canola | mitochondrion, nucleus | 60.42 | 38.03 |
| CDY35437 | Canola | mitochondrion, nucleus | 59.38 | 35.96 |
| CDY22483 | Canola | mitochondrion | 55.21 | 34.98 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 39.58 | 32.9 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 43.75 | 32.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.71 | 31.78 |
| KRH71659 | Soybean | nucleus | 46.88 | 29.13 |
| KRH33121 | Soybean | nucleus | 46.88 | 29.13 |
| EER92269 | Sorghum | nucleus | 43.23 | 29.12 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 47.4 | 28.98 |
| Os03t0351800-01 | Rice | nucleus | 42.71 | 28.98 |
| Zm00001d047476_P001 | Maize | mitochondrion | 42.19 | 27.74 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 48.44 | 27.68 |
| KRH14643 | Soybean | nucleus | 48.44 | 27.68 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 41.15 | 27.34 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 41.15 | 27.34 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 40.62 | 27.08 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 40.62 | 26.99 |
| PGSC0003DMT400058464 | Potato | nucleus | 42.71 | 25.79 |
| Solyc08g075910.1.1 | Tomato | nucleus | 40.1 | 25.58 |
| KRH18631 | Soybean | nucleus | 40.62 | 25.49 |
| Solyc01g009000.2.1 | Tomato | plastid | 42.19 | 25.47 |
| CDY36069 | Canola | cytosol | 28.65 | 25.35 |
| PGSC0003DMT400079301 | Potato | nucleus | 39.58 | 25.33 |
| CDX82271 | Canola | cytosol | 27.6 | 24.88 |
| CDY72364 | Canola | cytosol | 28.65 | 24.77 |
| KRH18634 | Soybean | nucleus | 29.17 | 23.73 |
| KRH73496 | Soybean | mitochondrion | 42.71 | 22.1 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.29 | 20.74 |
| CDY46577 | Canola | nucleus | 31.25 | 20.62 |
| CDX92768 | Canola | nucleus | 30.73 | 19.09 |
| CDX74533 | Canola | cytosol | 28.12 | 18.49 |
| CDX92770 | Canola | nucleus | 30.73 | 18.21 |
| CDY22790 | Canola | nucleus | 25.52 | 18.15 |
| CDY42740 | Canola | nucleus | 30.21 | 18.01 |
| CDY26096 | Canola | nucleus | 27.08 | 17.69 |
| CDY32791 | Canola | nucleus | 31.77 | 17.33 |
| CDY56081 | Canola | nucleus | 21.35 | 17.15 |
| CDY24592 | Canola | nucleus | 28.65 | 17.13 |
| CDX94665 | Canola | nucleus | 20.83 | 17.02 |
| CDY32333 | Canola | cytosol | 20.83 | 17.02 |
| CDY33437 | Canola | cytosol | 28.65 | 16.98 |
| CDY68603 | Canola | cytosol | 21.35 | 16.94 |
| CDY42507 | Canola | cytosol | 29.69 | 16.81 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 28.12 | 16.72 |
| CDY20473 | Canola | nucleus, plastid | 28.65 | 16.47 |
| CDY01669 | Canola | plastid | 27.6 | 16.41 |
| CDY10554 | Canola | cytosol | 26.04 | 16.39 |
| CDX74839 | Canola | cytosol, plastid | 27.6 | 16.36 |
| CDY01221 | Canola | cytosol | 18.23 | 16.05 |
| CDY08249 | Canola | cytosol | 27.08 | 15.52 |
| CDX89343 | Canola | cytosol, mitochondrion | 28.12 | 15.34 |
| CDY56022 | Canola | nucleus | 25.0 | 15.34 |
| CDY50031 | Canola | cytosol | 22.92 | 15.17 |
| CDY48679 | Canola | cytosol, plastid | 26.04 | 14.97 |
| CDY33046 | Canola | plastid | 26.56 | 14.91 |
| CDX99105 | Canola | cytosol, plastid | 25.0 | 14.81 |
| CDY24951 | Canola | nucleus | 28.65 | 14.67 |
| CDX80258 | Canola | plastid | 27.08 | 14.65 |
| CDY53450 | Canola | cytosol | 24.48 | 14.6 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.88 | 14.48 |
| CDX94342 | Canola | mitochondrion, nucleus | 29.17 | 14.47 |
| CDY07641 | Canola | nucleus | 28.12 | 14.44 |
| CDY56080 | Canola | cytosol | 21.35 | 14.44 |
| CDY28208 | Canola | cytosol | 17.19 | 14.22 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.88 | 14.05 |
| CDY43991 | Canola | nucleus | 22.4 | 13.92 |
| CDY61251 | Canola | cytosol | 25.52 | 13.57 |
| CDY69134 | Canola | cytosol | 19.79 | 13.06 |
| CDX88709 | Canola | cytosol, plastid | 26.04 | 12.69 |
| CDX78323 | Canola | cytosol | 18.75 | 12.5 |
| CDY21513 | Canola | cytosol | 22.92 | 12.36 |
| CDX85531 | Canola | cytosol | 21.35 | 11.95 |
| CDX69973 | Canola | cytosol | 22.4 | 11.94 |
| CDX90972 | Canola | cytosol | 20.31 | 11.64 |
| CDY26465 | Canola | cytosol | 20.31 | 11.5 |
| CDX69496 | Canola | cytosol | 17.19 | 11.46 |
| CDY58938 | Canola | nucleus | 25.52 | 11.11 |
| CDY34721 | Canola | cytosol | 22.4 | 11.03 |
| CDY34722 | Canola | cytosol | 22.4 | 11.03 |
| CDY03622 | Canola | nucleus | 25.52 | 10.99 |
| CDY51628 | Canola | peroxisome | 22.4 | 10.59 |
| CDY02194 | Canola | peroxisome | 21.88 | 10.55 |
| CDY11934 | Canola | nucleus | 30.21 | 8.9 |
| CDY23599 | Canola | golgi, mitochondrion | 22.4 | 7.06 |
Protein Annotations
| EnsemblPlants:CDX75998 | EnsemblPlantsGene:GSBRNA2T00126212001 | Gene3D:3.30.40.10 | GO:A0A078CLQ4 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX75998 | ProteinID:CDX75998.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002544783 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA04g02620D
Coordinates
chrLK031806:+:114075..115793
Molecular Weight (calculated)
22280.0 Da
IEP (calculated)
9.613
GRAVY (calculated)
-1.060
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MESFNEVRIH MCKARNFNYY YLQTPLGFPP RRGTSHHRGP PPAAKSSIDA LPTVKIIQKH LKSSDSHCPV CKEEFELKSE AKQMPCKHVY HSDCIVPWLV
101: QHNTCPVCRK ELPSRGSSLS AQSEQNRSTN RRRNLFSSVW PFRSSSSSST QNRRETNNTA NTEEGQYTRY QHHHQHQQQQ ANMGYSGWPF DY
101: QHNTCPVCRK ELPSRGSSLS AQSEQNRSTN RRRNLFSSVW PFRSSSSSST QNRRETNNTA NTEEGQYTRY QHHHQHQQQQ ANMGYSGWPF DY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.