Factsheet for GSMUA_Achr11P05810_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09890_001	Banana	nucleus	45.82	59.31
EER92269	Sorghum	nucleus	49.83	52.28
Zm00001d047476_P001	Maize	mitochondrion	49.5	50.68
Os03t0351800-01	Rice	nucleus	47.49	50.18
TraesCS3A01G440000.1	Wheat	mitochondrion	47.49	49.13
TraesCS3D01G432800.1	Wheat	mitochondrion	47.16	48.79
TraesCS3B01G474100.1	Wheat	mitochondrion	46.82	48.61
HORVU3Hr1G096110.1	Barley	mitochondrion	46.49	48.1
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	37.46	43.24
VIT_08s0040g00590.t01	Wine grape	nucleus	44.82	42.68
GSMUA_AchrUn_...	Banana	nucleus	36.12	41.86
KRH33121	Soybean	nucleus	42.81	41.42
KRH71659	Soybean	nucleus	42.47	41.1
VIT_06s0009g02350.t01	Wine grape	mitochondrion	43.48	38.69
KRH18631	Soybean	nucleus	38.8	37.91
CDY35437	Canola	mitochondrion, nucleus	40.13	37.85
Bra000207.1-P	Field mustard	mitochondrion, nucleus	40.13	37.85
CDY22483	Canola	mitochondrion	37.46	36.96
PGSC0003DMT400058464	Potato	nucleus	39.13	36.79
KRH14643	Soybean	nucleus	41.14	36.61
AT2G40830.4	Thale cress	mitochondrion	40.13	36.59
Bra004589.1-P	Field mustard	nucleus	29.77	36.48
Solyc01g009000.2.1	Tomato	plastid	38.13	35.85
CDY23878	Canola	mitochondrion, nucleus	36.45	35.74
CDX79968	Canola	mitochondrion, nucleus	34.78	35.02
PGSC0003DMT400079301	Potato	nucleus	34.78	34.67
Solyc08g075910.1.1	Tomato	nucleus	34.45	34.22
KRH18634	Soybean	nucleus	26.76	33.9
AT3G56580.1	Thale cress	mitochondrion	36.12	33.75
KRH73496	Soybean	mitochondrion	41.81	33.69
CDY27204	Canola	mitochondrion, nucleus	34.78	33.33
Bra007253.1-P	Field mustard	mitochondrion, nucleus	34.45	33.23
GSMUA_Achr7P13060_001	Banana	mitochondrion	27.09	32.93
CDX72127	Canola	mitochondrion	34.45	32.59
Bra014684.1-P	Field mustard	nucleus	20.74	32.29
CDX75998	Canola	nucleus	20.74	32.29
GSMUA_Achr9P05060_001	Banana	nucleus	18.06	29.03
GSMUA_Achr5P19380_001	Banana	plastid	18.06	28.27
GSMUA_Achr11P...	Banana	nucleus	25.08	27.78
CDX94901	Canola	cytosol	28.76	27.39
GSMUA_Achr6P08590_001	Banana	nucleus	25.08	25.6
GSMUA_Achr7P15040_001	Banana	mitochondrion	26.42	25.0
GSMUA_Achr10P...	Banana	nucleus	25.08	24.75
GSMUA_Achr5P07680_001	Banana	nucleus	24.41	24.5
GSMUA_Achr10P...	Banana	mitochondrion	27.09	24.04
GSMUA_Achr7P18340_001	Banana	nucleus	24.08	24.0
GSMUA_Achr5P07070_001	Banana	nucleus	25.42	23.1
GSMUA_Achr2P03780_001	Banana	cytosol	26.76	22.79
GSMUA_Achr10P...	Banana	nucleus	21.4	22.7
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	25.42	22.09
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	25.42	21.65
GSMUA_Achr2P19140_001	Banana	mitochondrion	24.75	20.44
GSMUA_Achr10P...	Banana	mitochondrion	26.42	19.65
GSMUA_Achr4P02460_001	Banana	nucleus	18.06	13.04
GSMUA_Achr8P24510_001	Banana	cytosol	15.05	11.36
GSMUA_Achr11P...	Banana	cytosol	21.4	8.83
GSMUA_Achr3P06300_001	Banana	cytosol	14.05	8.05

Protein Annotations

EnsemblPlants:GSMUA_Achr11P05810_001	EnsemblPlants:GSMUA_Achr11T05810_001	EnsemblPlantsGene:GSMUA_Achr11G05810_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290
PANTHER:PTHR44290:SF1	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00029487D7	UniProt:M0RPR1	MapMan:35.1	:

Description

Putative E3 ubiquitin-protein ligase RING1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05810_001]

Coordinates

chr11:-:4327958..4329302

Molecular Weight (calculated)

33296.4 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.316

Length

299 amino acids

Sequence
(BLAST)

001: MSNNSTHWCY QCRQRVEPCQ RHMVCPICNS GFVLELDEID ATPSDHVGVD PDAVHDPWIR IMEATSFLTR RRRVRSRHHG GLIRMLNVNS DFGMEFGSGP
101: LAVSRGGQIP VHESEGHGLD TSLNGHYGVG IRQADMIDSF ADTADYFVEP GLDELIEQSM QNDRHGAPSA SRSSIDAMPI IKINQRHLRV DSQCPICLER
201: FEIGSEAREM PCTHLYHSEC IIPWLEQHNS CPVCRYEMPT QGSGNWSSRS SGQTSGSSSR NSGQRLRDLL SSIRVFISNG VLFIVSSSIL VLNLLCAIA

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.