Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 70.93 | 70.66 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 43.41 | 48.48 |
| KRH71659 | Soybean | nucleus | 55.43 | 46.28 |
| KRH33121 | Soybean | nucleus | 54.65 | 45.63 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 55.04 | 45.22 |
| Bra014684.1-P | Field mustard | nucleus | 31.78 | 42.71 |
| CDX75998 | Canola | nucleus | 31.78 | 42.71 |
| CDY23878 | Canola | mitochondrion, nucleus | 48.45 | 40.98 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 53.1 | 40.77 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 50.0 | 40.69 |
| CDY35437 | Canola | mitochondrion, nucleus | 50.0 | 40.69 |
| CDY22483 | Canola | mitochondrion | 47.29 | 40.26 |
| Bra004589.1-P | Field mustard | nucleus | 37.98 | 40.16 |
| AT2G40830.4 | Thale cress | mitochondrion | 50.78 | 39.94 |
| CDX79968 | Canola | mitochondrion, nucleus | 45.35 | 39.39 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 47.29 | 39.35 |
| CDY27204 | Canola | mitochondrion, nucleus | 46.9 | 38.78 |
| CDX72127 | Canola | mitochondrion | 47.29 | 38.61 |
| PGSC0003DMT400058464 | Potato | nucleus | 47.29 | 38.36 |
| AT3G56580.1 | Thale cress | mitochondrion | 47.29 | 38.12 |
| KRH14643 | Soybean | nucleus | 49.61 | 38.1 |
| Solyc01g009000.2.1 | Tomato | plastid | 46.12 | 37.42 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.86 | 36.12 |
| KRH18634 | Soybean | nucleus | 31.78 | 34.75 |
| KRH18631 | Soybean | nucleus | 39.53 | 33.33 |
| PGSC0003DMT400079301 | Potato | nucleus | 38.37 | 33.0 |
| CDX94901 | Canola | cytosol | 39.92 | 32.8 |
| Solyc08g075910.1.1 | Tomato | nucleus | 37.98 | 32.56 |
| KRH73496 | Soybean | mitochondrion | 44.96 | 31.27 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 29.07 | 30.49 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 21.71 | 29.32 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 33.72 | 27.53 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 19.77 | 27.42 |
| GSMUA_Achr10P... | Banana | nucleus | 29.07 | 26.6 |
| GSMUA_Achr11P... | Banana | nucleus | 27.13 | 25.93 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 32.95 | 25.84 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 34.5 | 25.36 |
| GSMUA_Achr10P... | Banana | mitochondrion | 31.78 | 24.33 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 27.13 | 23.89 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 30.62 | 22.97 |
| GSMUA_Achr10P... | Banana | nucleus | 26.36 | 22.44 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 31.01 | 22.1 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 29.84 | 21.94 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 25.19 | 21.81 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 24.42 | 21.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 30.62 | 19.65 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 21.71 | 13.53 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 18.99 | 12.37 |
| GSMUA_Achr11P... | Banana | cytosol | 23.64 | 8.41 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 15.89 | 7.85 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP20100_001 | EnsemblPlants:GSMUA_AchrUn_randomT20100_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG20100_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295F08A | UniProt:M0UAR9 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20100_001]
Coordinates
chrchrUn_random:+:97776665..97778963
Molecular Weight (calculated)
28784.6 Da
IEP (calculated)
6.929
GRAVY (calculated)
-0.585
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRANTHWCY VCSRAVQPLG RDMTCPNCNG GFVQELNELD DRLNPFDYFA VDSNDRRNNQ PSVPMGNGTR FGLEPWLLFR GQLPSHTSNG ETELLFNGGT
101: GVGMSRANLG HYFFGSGFED FIEQLSRNNH HGPPPASQSA IDAMPIVKIN QRHLRGDSHC PVCKDKFELG SEAREMPCKH LYHSDCIIPW LVQHNSCPVC
201: RHRLPSQASA RRNLFSFLGP YGTAITTNSN TNGTGGSSST AVQEDINQMH YSGWPFDY
101: GVGMSRANLG HYFFGSGFED FIEQLSRNNH HGPPPASQSA IDAMPIVKIN QRHLRGDSHC PVCKDKFELG SEAREMPCKH LYHSDCIIPW LVQHNSCPVC
201: RHRLPSQASA RRNLFSFLGP YGTAITTNSN TNGTGGSSST AVQEDINQMH YSGWPFDY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.