Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35437 | Canola | mitochondrion, nucleus | 94.72 | 90.54 |
| AT2G40830.4 | Thale cress | mitochondrion | 86.14 | 79.57 |
| CDY23878 | Canola | mitochondrion, nucleus | 79.54 | 79.02 |
| CDX79968 | Canola | mitochondrion, nucleus | 77.23 | 78.79 |
| CDY27204 | Canola | mitochondrion, nucleus | 59.74 | 58.01 |
| CDX72127 | Canola | mitochondrion | 59.74 | 57.28 |
| CDX75998 | Canola | nucleus | 34.98 | 55.21 |
| KRH71659 | Soybean | nucleus | 55.45 | 54.37 |
| KRH33121 | Soybean | nucleus | 54.79 | 53.72 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 54.46 | 52.55 |
| CDX94901 | Canola | cytosol | 50.83 | 49.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.26 | 47.29 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 52.15 | 47.02 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 38.94 | 45.56 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 34.32 | 45.02 |
| KRH14643 | Soybean | nucleus | 49.84 | 44.94 |
| Os03t0351800-01 | Rice | nucleus | 41.25 | 44.17 |
| Solyc01g009000.2.1 | Tomato | plastid | 46.2 | 44.03 |
| EER92269 | Sorghum | nucleus | 41.25 | 43.86 |
| PGSC0003DMT400058464 | Potato | nucleus | 45.87 | 43.71 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 41.58 | 43.6 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 41.58 | 43.6 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 41.25 | 43.4 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 41.25 | 43.25 |
| KRH18631 | Soybean | nucleus | 42.9 | 42.48 |
| Zm00001d047476_P001 | Maize | mitochondrion | 40.26 | 41.78 |
| PGSC0003DMT400079301 | Potato | nucleus | 38.61 | 39.0 |
| KRH73496 | Soybean | mitochondrion | 47.19 | 38.54 |
| Solyc08g075910.1.1 | Tomato | nucleus | 38.28 | 38.54 |
| GSMUA_Achr11P... | Banana | mitochondrion | 36.96 | 37.46 |
| KRH18634 | Soybean | nucleus | 28.05 | 36.02 |
| CDY72364 | Canola | cytosol | 24.75 | 33.78 |
| CDX82271 | Canola | cytosol | 23.43 | 33.33 |
| CDY36069 | Canola | cytosol | 23.76 | 33.18 |
| CDY46577 | Canola | nucleus | 28.05 | 29.21 |
| CDY24592 | Canola | nucleus | 30.69 | 28.97 |
| CDY33437 | Canola | cytosol | 30.36 | 28.4 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 29.7 | 27.86 |
| CDY22790 | Canola | nucleus | 24.75 | 27.78 |
| CDX74533 | Canola | cytosol | 25.08 | 26.03 |
| CDX92768 | Canola | nucleus | 26.07 | 25.57 |
| CDY26096 | Canola | nucleus | 24.42 | 25.17 |
| CDY20473 | Canola | nucleus, plastid | 27.72 | 25.15 |
| CDY56081 | Canola | nucleus | 19.8 | 25.1 |
| CDY32791 | Canola | nucleus | 29.04 | 25.0 |
| CDX74839 | Canola | cytosol, plastid | 26.73 | 25.0 |
| CDY10554 | Canola | cytosol | 24.75 | 24.59 |
| CDX92770 | Canola | nucleus | 26.07 | 24.38 |
| CDY42507 | Canola | cytosol | 27.06 | 24.19 |
| CDY01669 | Canola | plastid | 25.74 | 24.15 |
| CDY42740 | Canola | nucleus | 25.41 | 23.91 |
| CDX94665 | Canola | nucleus | 18.48 | 23.83 |
| CDY50031 | Canola | cytosol | 22.77 | 23.79 |
| CDY68603 | Canola | cytosol | 18.81 | 23.55 |
| CDY61251 | Canola | cytosol | 28.05 | 23.55 |
| CDX80258 | Canola | plastid | 27.39 | 23.38 |
| CDY08249 | Canola | cytosol | 25.41 | 22.99 |
| CDY56022 | Canola | nucleus | 23.43 | 22.68 |
| CDY53450 | Canola | cytosol | 24.09 | 22.67 |
| CDY43991 | Canola | nucleus | 23.1 | 22.65 |
| CDY56080 | Canola | cytosol | 21.12 | 22.54 |
| CDX99105 | Canola | cytosol, plastid | 24.09 | 22.53 |
| CDY07641 | Canola | nucleus | 27.72 | 22.46 |
| CDX89343 | Canola | cytosol, mitochondrion | 26.07 | 22.44 |
| CDY24951 | Canola | nucleus | 27.72 | 22.4 |
| CDY32333 | Canola | cytosol | 17.16 | 22.13 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.12 | 22.07 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.45 | 21.74 |
| CDY48679 | Canola | cytosol, plastid | 23.76 | 21.56 |
| CDY33046 | Canola | plastid | 23.76 | 21.05 |
| CDX94342 | Canola | mitochondrion, nucleus | 26.4 | 20.67 |
| CDY28208 | Canola | cytosol | 15.51 | 20.26 |
| CDX88709 | Canola | cytosol, plastid | 25.74 | 19.8 |
| CDY69134 | Canola | cytosol | 16.83 | 17.53 |
| CDX78323 | Canola | cytosol | 16.17 | 17.01 |
| CDY58938 | Canola | nucleus | 23.76 | 16.33 |
| CDY03622 | Canola | nucleus | 23.76 | 16.14 |
| CDY01221 | Canola | cytosol | 11.55 | 16.05 |
| CDY21513 | Canola | cytosol | 18.81 | 16.01 |
| CDX69973 | Canola | cytosol | 18.48 | 15.56 |
| CDY51628 | Canola | peroxisome | 18.81 | 14.04 |
| CDY02194 | Canola | peroxisome | 18.15 | 13.82 |
| CDX69496 | Canola | cytosol | 12.87 | 13.54 |
| CDY11934 | Canola | nucleus | 28.05 | 13.04 |
| CDX85531 | Canola | cytosol | 14.52 | 12.83 |
| CDY34721 | Canola | cytosol | 16.17 | 12.56 |
| CDY34722 | Canola | cytosol | 16.17 | 12.56 |
| CDX90972 | Canola | cytosol | 13.86 | 12.54 |
| CDY26465 | Canola | cytosol | 12.87 | 11.5 |
| CDY23599 | Canola | golgi, mitochondrion | 22.44 | 11.17 |
Protein Annotations
| EnsemblPlants:CDY22483 | EnsemblPlantsGene:GSBRNA2T00019043001 | Gene3D:3.30.40.10 | GO:A0A078GCT6 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY22483 | ProteinID:CDY22483.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EDCCC1 | UniProt:A0A078GCT6 | MapMan:35.1 | : | : | : |
Description
BnaC03g22930DBnaC03g22930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCT6]
Coordinates
chrLK032132:+:110322..112937
Molecular Weight (calculated)
33554.8 Da
IEP (calculated)
7.541
GRAVY (calculated)
-0.707
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGNTHWC HRCQRAVRLH GRDPVCSYCG GGFVELLELP QASPFGMFRS HRDVVERDPT FDLMDAFSDF MRNRETRARS ISSGPENFPG LAPLLIFGGQ
101: VPYRLSGIES LFNGGSPGIG ITRGNHTGDY FFGPGLEELF EQLSAGTTTR SGPPPAPRSS IDALPTIKIA QRHLRSSDSN CAVCKDEFEL GAEAKQMPCN
201: HIYHSDCIVP WLVQHNSCPV CRQELPSARS SQNRTTTRNN RSSSNERRSP FSSFWPFRSS GSTSNSTHNR GSSASNSDGT DENHNYHQQQ QSHMGYGGWP
301: FDY
101: VPYRLSGIES LFNGGSPGIG ITRGNHTGDY FFGPGLEELF EQLSAGTTTR SGPPPAPRSS IDALPTIKIA QRHLRSSDSN CAVCKDEFEL GAEAKQMPCN
201: HIYHSDCIVP WLVQHNSCPV CRQELPSARS SQNRTTTRNN RSSSNERRSP FSSFWPFRSS GSTSNSTHNR GSSASNSDGT DENHNYHQQQ QSHMGYGGWP
301: FDY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.