Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08249 | Canola | cytosol | 94.56 | 82.99 |
| CDY10554 | Canola | cytosol | 56.12 | 54.1 |
| AT1G55530.2 | Thale cress | nucleus | 63.61 | 53.28 |
| CDY56022 | Canola | nucleus | 56.46 | 53.04 |
| CDY56080 | Canola | cytosol | 44.56 | 46.13 |
| CDY46577 | Canola | nucleus | 45.24 | 45.7 |
| CDY56081 | Canola | nucleus | 36.73 | 45.19 |
| CDY50031 | Canola | cytosol | 44.56 | 45.17 |
| CDY43991 | Canola | nucleus | 46.26 | 44.01 |
| GSMUA_Achr11P... | Banana | nucleus | 36.05 | 39.26 |
| CDY32791 | Canola | nucleus | 46.6 | 38.92 |
| CDX92768 | Canola | nucleus | 40.82 | 38.84 |
| CDX92770 | Canola | nucleus | 41.16 | 37.35 |
| CDY28208 | Canola | cytosol | 29.25 | 37.07 |
| CDY42740 | Canola | nucleus | 40.48 | 36.96 |
| CDX89343 | Canola | cytosol, mitochondrion | 43.54 | 36.36 |
| Zm00001d010635_P001 | Maize | nucleus | 38.1 | 35.9 |
| Os05t0488800-01 | Rice | nucleus | 38.78 | 35.29 |
| Zm00001d038528_P001 | Maize | cytosol | 39.12 | 34.53 |
| CDX82271 | Canola | cytosol | 24.83 | 34.27 |
| CDX94342 | Canola | mitochondrion, nucleus | 44.56 | 33.85 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 37.76 | 33.43 |
| CDY36069 | Canola | cytosol | 24.49 | 33.18 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 37.41 | 33.13 |
| CDY72364 | Canola | cytosol | 24.83 | 32.88 |
| Os03t0812200-01 | Rice | nucleus | 40.48 | 32.25 |
| Zm00001d013005_P002 | Maize | nucleus | 37.76 | 29.92 |
| KXG22238 | Sorghum | plastid | 39.12 | 29.56 |
| HORVU1Hr1G068950.2 | Barley | golgi | 38.44 | 29.27 |
| KXG37275 | Sorghum | nucleus | 37.41 | 28.72 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 30.61 | 27.86 |
| CDY24592 | Canola | nucleus | 30.27 | 27.73 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 37.07 | 27.39 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 37.41 | 27.36 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 37.41 | 27.23 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 37.41 | 27.23 |
| CDY33437 | Canola | cytosol | 29.93 | 27.16 |
| CDX75998 | Canola | nucleus | 17.69 | 27.08 |
| CDY68603 | Canola | cytosol | 21.43 | 26.03 |
| CDY22790 | Canola | nucleus | 23.81 | 25.93 |
| CDY23878 | Canola | mitochondrion, nucleus | 26.87 | 25.9 |
| CDX94665 | Canola | nucleus | 20.41 | 25.53 |
| CDY32333 | Canola | cytosol | 20.41 | 25.53 |
| CDY22483 | Canola | mitochondrion | 25.17 | 24.42 |
| CDX79968 | Canola | mitochondrion, nucleus | 24.15 | 23.91 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 23.47 | 23.79 |
| CDY35437 | Canola | mitochondrion, nucleus | 25.17 | 23.34 |
| CDY42507 | Canola | cytosol | 26.53 | 23.01 |
| CDY27204 | Canola | mitochondrion, nucleus | 24.15 | 22.76 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 23.13 | 22.74 |
| CDX72127 | Canola | mitochondrion | 24.15 | 22.47 |
| CDY23599 | Canola | golgi, mitochondrion | 46.26 | 22.33 |
| CDX74533 | Canola | cytosol | 21.77 | 21.92 |
| CDY11934 | Canola | nucleus | 48.3 | 21.78 |
| CDY53450 | Canola | cytosol | 23.13 | 21.12 |
| CDY61251 | Canola | cytosol | 25.51 | 20.78 |
| CDX99105 | Canola | cytosol, plastid | 22.79 | 20.68 |
| CDX80258 | Canola | plastid | 24.83 | 20.56 |
| CDY48679 | Canola | cytosol, plastid | 21.77 | 19.16 |
| CDY33046 | Canola | plastid | 22.11 | 19.01 |
| CDY01669 | Canola | plastid | 20.75 | 18.89 |
| CDX94901 | Canola | cytosol | 20.07 | 18.79 |
| CDX88709 | Canola | cytosol, plastid | 24.15 | 18.02 |
| CDY20473 | Canola | nucleus, plastid | 20.41 | 17.96 |
| CDY07641 | Canola | nucleus | 22.79 | 17.91 |
| CDY24951 | Canola | nucleus | 22.45 | 17.6 |
| CDX74839 | Canola | cytosol, plastid | 19.39 | 17.59 |
| CDY01221 | Canola | cytosol | 11.22 | 15.14 |
| CDX78323 | Canola | cytosol | 14.29 | 14.58 |
| CDY58938 | Canola | nucleus | 21.77 | 14.51 |
| CDY03622 | Canola | nucleus | 21.77 | 14.35 |
| CDY69134 | Canola | cytosol | 13.61 | 13.75 |
| CDX69496 | Canola | cytosol | 13.27 | 13.54 |
| CDY26465 | Canola | cytosol | 15.31 | 13.27 |
| CDY21513 | Canola | cytosol | 14.97 | 12.36 |
| CDX69973 | Canola | cytosol | 14.97 | 12.22 |
| CDX90972 | Canola | cytosol | 13.27 | 11.64 |
| CDY02194 | Canola | peroxisome | 14.97 | 11.06 |
| CDY34721 | Canola | cytosol | 14.63 | 11.03 |
| CDY34722 | Canola | cytosol | 14.63 | 11.03 |
| CDY51628 | Canola | peroxisome | 14.97 | 10.84 |
| CDX85531 | Canola | cytosol | 12.59 | 10.79 |
Protein Annotations
| EnsemblPlants:CDY26096 | EnsemblPlantsGene:GSBRNA2T00034720001 | Gene3D:3.30.40.10 | GO:A0A078GLA3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY26096 | ProteinID:CDY26096.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EF39AE | UniProt:A0A078GLA3 | MapMan:35.1 | : | : | : |
Description
BnaC06g11000DBnaC06g11000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLA3]
Coordinates
chrLK032185:+:216141..217748
Molecular Weight (calculated)
32437.0 Da
IEP (calculated)
4.235
GRAVY (calculated)
-0.685
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEAASATSY WCHMCSQTVN AVMMEDEIKC PFCRSGFVEE MDEDHHSSDR RATTTTSSIW APILMEMMNN SATRNQTAES VENENGNALQ PESRRLIVIS
101: PHHQIIAVPR SLVTDSMPDG SSLSDYFIGP GFEALLQRLA ENDPNRYGTP PARKEDVESL ATVKIQEPSL QCSVCLDDFE VGAEAKQMPC KHNFHADCLL
201: PWLELHSSCP VCRYQLPTDE TKTTDSATYD NNGVNESSSA TSSSSQGTEN SDANRHEGEG EEENDDGNRN AFSIPWPFSS LFSSSSSQGR NSSD
101: PHHQIIAVPR SLVTDSMPDG SSLSDYFIGP GFEALLQRLA ENDPNRYGTP PARKEDVESL ATVKIQEPSL QCSVCLDDFE VGAEAKQMPC KHNFHADCLL
201: PWLELHSSCP VCRYQLPTDE TKTTDSATYD NNGVNESSSA TSSSSQGTEN SDANRHEGEG EEENDDGNRN AFSIPWPFSS LFSSSSSQGR NSSD
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.