CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90616
CDY12145
CDY29066
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	CDY12145	AT2G32950.1	10488108
AT5G64920.1	CDY52540	AT2G32950.1	10488108
AT5G64920.1	CDY12145	AT2G32950.1	12028569
AT5G64920.1	CDY52540	AT2G32950.1	12028569
AT5G64920.1	CDY12145	AT2G32950.1	12827204
AT5G64920.1	CDY52540	AT2G32950.1	12827204
AT5G64920.1	CDX90616	AT3G52155.1	21798944
AT5G64920.1	CDY29066	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94665	Canola	nucleus	64.68	64.68
CDY68603	Canola	cytosol	66.38	64.46
CDX81263	Canola	cytosol, peroxisome, plastid	46.81	37.93
CDY18690	Canola	cytosol, peroxisome, plastid	46.38	36.45
AT5G64920.1	Thale cress	cytosol	47.66	33.53
KRH36150	Soybean	nucleus	41.7	29.43
KRG90607	Soybean	nucleus	41.7	29.08
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	37.02	26.05
Solyc09g074460.1.1	Tomato	nucleus	39.57	24.67
PGSC0003DMT400081469	Potato	nucleus	39.15	24.34
CDY36069	Canola	cytosol	22.13	23.96
CDX82271	Canola	cytosol	21.28	23.47
CDY72364	Canola	cytosol	21.28	22.52
CDY46577	Canola	nucleus	26.38	21.31
CDY22790	Canola	nucleus	24.26	21.11
CDY50031	Canola	cytosol	25.96	21.03
CDX75998	Canola	nucleus	17.02	20.83
CDY28208	Canola	cytosol	20.43	20.69
CDY26096	Canola	nucleus	25.53	20.41
CDY43991	Canola	nucleus	26.38	20.06
CDY56080	Canola	cytosol	23.83	19.72
CDY25360	Canola	cytosol, nucleus, plastid	26.81	19.5
CDY10554	Canola	cytosol	25.11	19.34
CDY33437	Canola	cytosol	26.38	19.14
CDY24592	Canola	nucleus	25.96	19.0
CDY56081	Canola	nucleus	19.15	18.83
CDX99105	Canola	cytosol, plastid	25.96	18.83
CDY08249	Canola	cytosol	26.81	18.81
CDX92768	Canola	nucleus	24.68	18.77
CDY56022	Canola	nucleus	24.68	18.53
CDX92770	Canola	nucleus	24.68	17.9
CDX72127	Canola	mitochondrion	23.83	17.72
CDY42740	Canola	nucleus	24.26	17.7
CDY20473	Canola	nucleus, plastid	25.11	17.66
CDY27204	Canola	mitochondrion, nucleus	23.4	17.63
CDY32791	Canola	nucleus	26.38	17.61
CDX89343	Canola	cytosol, mitochondrion	26.38	17.61
CDY33046	Canola	plastid	25.53	17.54
CDX79968	Canola	mitochondrion, nucleus	22.13	17.51
CDX74533	Canola	cytosol	21.7	17.47
CDY61251	Canola	cytosol	26.81	17.45
CDY23878	Canola	mitochondrion, nucleus	22.55	17.38
CDX74839	Canola	cytosol, plastid	23.83	17.28
CDY22483	Canola	mitochondrion	22.13	17.16
CDY53450	Canola	cytosol	23.4	17.08
CDY24951	Canola	nucleus	27.23	17.07
CDY07641	Canola	nucleus	26.81	16.84
CDY42507	Canola	cytosol	24.26	16.81
CDX94342	Canola	mitochondrion, nucleus	27.23	16.54
CDX88709	Canola	cytosol, plastid	27.66	16.5
CDY48679	Canola	cytosol, plastid	23.4	16.47
CDY35437	Canola	mitochondrion, nucleus	22.13	16.4
CDX80258	Canola	plastid	24.68	16.34
CDY01669	Canola	plastid	22.13	16.1
CDY34722	Canola	cytosol	25.96	15.64
CDX78323	Canola	cytosol	19.15	15.62
CDY69134	Canola	cytosol	19.15	15.46
CDY34721	Canola	cytosol	25.11	15.13
CDX90972	Canola	cytosol	20.85	14.63
CDY01221	Canola	cytosol	13.19	14.22
CDX69973	Canola	cytosol	21.7	14.17
CDX94901	Canola	cytosol	18.72	14.01
CDX85531	Canola	cytosol	20.0	13.7
CDY26465	Canola	cytosol	19.57	13.57
CDX69496	Canola	cytosol	16.6	13.54
CDY21513	Canola	cytosol	20.0	13.2
CDY58938	Canola	nucleus	24.26	12.93
CDY03622	Canola	nucleus	24.26	12.78
CDY02194	Canola	peroxisome	20.43	12.06
CDY51628	Canola	peroxisome	20.43	11.82
CDY23599	Canola	golgi, mitochondrion	26.38	10.18
CDY11934	Canola	nucleus	27.66	9.97

Protein Annotations

EnsemblPlants:CDY32333	EnsemblPlantsGene:GSBRNA2T00051842001	Gene3D:3.30.40.10	GO:A0A078H691	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089	ProteinID:CDY32333
ProteinID:CDY32333.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EEDCA8	UniProt:A0A078H691
MapMan:35.1	:	:	:	:	:

Description

BnaC01g36520DBnaC01g36520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H691]

Coordinates

chrLK032292:+:193008..193715

Molecular Weight (calculated)

26720.9 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.543

Length

235 amino acids

Sequence
(BLAST)

001: MSEAQESDWC YHCDKHVAVR TLEHVVLCCE CNKGFIRSIQ AIPEPPPPLP QDSIRFEELL NELRRQREIH ILRMIDRLAG YDVAFLPNIL QVDNGGGRRR
101: GAPPAAKSAV EALETFEIGS TCVEEGERMS LVCAVCKDAM VTGEIGKKLP CGHCYHDNCI LPWLETRNSC PVCRFQLRTD DAEYESNRAR EEPPLTVVAS
201: ASSSMIGREE NNDQHVVETR RRSTRKRKPN RRFLD

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.