Factsheet for Solyc09g074460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g015330.2.1
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	Solyc12g005950.1.1	AT2G32950.1	10488108
AT5G64920.1	Solyc12g005950.1.1	AT2G32950.1	12028569
AT5G64920.1	Solyc12g005950.1.1	AT2G32950.1	12827204
AT5G64920.1	Solyc04g015330.2.1	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081469	Potato	nucleus	94.69	94.44
KRG90607	Soybean	nucleus	56.76	63.5
KRH36150	Soybean	nucleus	55.44	62.76
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	49.07	55.39
CDY18690	Canola	cytosol, peroxisome, plastid	40.58	51.17
CDX81263	Canola	cytosol, peroxisome, plastid	39.26	51.03
Bra037800.1-P	Field mustard	cytosol	40.58	50.66
AT5G64920.1	Thale cress	cytosol	44.56	50.3
CDY32333	Canola	cytosol	24.67	39.57
CDX94665	Canola	nucleus	24.14	38.72
Bra030136.1-P	Field mustard	cytosol	24.4	38.02
CDY68603	Canola	cytosol	24.4	38.02
Solyc06g005650.2.1	Tomato	extracellular	13.79	26.0
Solyc04g009170.1.1	Tomato	nucleus	20.95	25.57
Solyc03g098590.2.1	Tomato	cytosol	20.95	21.41
Solyc04g011610.1.1	Tomato	nucleus	22.28	21.27
Solyc08g075910.1.1	Tomato	nucleus	16.71	20.93
Solyc01g009000.2.1	Tomato	plastid	17.51	20.75
Solyc02g089410.2.1	Tomato	nucleus	17.24	19.88
Solyc01g104260.2.1	Tomato	mitochondrion	15.38	19.33
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	19.63	18.64
Solyc11g012950.1.1	Tomato	cytosol	16.18	18.32
Solyc01g050040.2.1	Tomato	nucleus	12.73	16.44
Solyc03g114680.2.1	Tomato	nucleus	20.95	15.86

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CV23	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g074460.1
EnsemblPlants:Solyc09g074460.1.1	UniParc:UPI000276B580	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

E3 ubiquitin-protein ligase CIP8 [Source:Projected from Arabidopsis thaliana (AT5G64920) UniProtKB/Swiss-Prot;Acc:Q9SPL2]

Coordinates

chr9:+:66259817..66260950

Molecular Weight (calculated)

41281.6 Da

IEP (calculated)

3.852

GRAVY (calculated)

-0.770

Length

377 amino acids

Sequence
(BLAST)

001: MAEAPSVPAP TGSDPDYWCY QCETRVAVET LPDLPADVIC NNCKSGFVES IPSRVVSVSP VTASTDQIDD PAFGNQFIQV LRLIAEAALD NDAPPPPPSE
101: HADPSDDDFL RVELDGWGND EEEEEDDDEE EEEDDDNGIG VRIGDDRENR GNRSQSEDDD DDDVDDDEEV ENRDDDEEDL RRRRRDVLRL RLRDFAARAA
201: NRRNRILDWA EILMGLEDHS IELRLQVPDG DGYVGNPGDY VDAEGYEALL QTLAESDGGG RRGAPPASKS AIEGLNTLVI KEEQEVMACA ICKDVVNVGE
301: MAKNLPCGHG YHDDCIVQWL GSRNSCPVCR FELPTDDPEY EEERKKRGAC VTSSGSSSSS EAPGAAAAAD DSSPSCL

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.