Factsheet for HORVU5Hr1G111530.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G480100.1	Wheat	nucleus	95.98	95.02
TraesCS5D01G480800.1	Wheat	nucleus	95.98	94.55
TraesCS5A01G467700.1	Wheat	nucleus	95.73	94.31
Os03t0812200-01	Rice	nucleus	71.11	76.69
KXG37275	Sorghum	nucleus	65.33	67.89
Zm00001d013005_P002	Maize	nucleus	61.81	66.31
GSMUA_Achr11P...	Banana	nucleus	32.91	48.52
CDY46577	Canola	nucleus	33.42	45.7
KRG97316	Soybean	nucleus	37.19	43.02
VIT_06s0004g00120.t01	Wine grape	nucleus	39.7	42.93
PGSC0003DMT400046527	Potato	nucleus	38.44	42.5
Bra027436.1-P	Field mustard	nucleus	32.91	42.39
CDY43991	Canola	nucleus	32.91	42.39
CDY10554	Canola	cytosol	31.41	40.98
CDX92768	Canola	nucleus	31.41	40.45
Bra030854.1-P	Field mustard	nucleus	31.66	40.38
Bra002823.1-P	Field mustard	nucleus	35.43	40.06
CDY32791	Canola	nucleus	35.18	39.77
CDY56022	Canola	nucleus	31.16	39.62
AT3G13430.2	Thale cress	nucleus	31.16	39.37
AT1G55530.2	Thale cress	nucleus	34.67	39.32
CDX92770	Canola	nucleus	31.41	38.58
AT5G56340.1	Thale cress	nucleus	37.94	38.13
CDY42740	Canola	nucleus	30.4	37.58
Bra019109.1-P	Field mustard	nucleus	30.15	37.27
Bra037109.1-P	Field mustard	nucleus	31.16	37.13
CDY26096	Canola	nucleus	27.39	37.07
CDY28208	Canola	cytosol	21.61	37.07
Bra011215.1-P	Field mustard	cytosol	21.61	37.07
AT4G26400.1	Thale cress	nucleus	32.91	36.8
CDY08249	Canola	cytosol	30.9	36.72
CDY56080	Canola	cytosol	26.13	36.62
Bra026444.1-P	Field mustard	nucleus	33.17	35.58
CDX89343	Canola	cytosol, mitochondrion	31.16	35.23
CDY50031	Canola	cytosol	25.63	35.17
Bra037999.1-P	Field mustard	nucleus	25.38	34.83
CDY56081	Canola	nucleus	20.1	33.47
HORVU1Hr1G068950.2	Barley	golgi	32.16	33.16
HORVU4Hr1G051610.2	Barley	cytosol	28.39	32.75
Solyc01g050040.2.1	Tomato	nucleus	23.87	32.53
CDX94342	Canola	mitochondrion, nucleus	31.41	32.3
HORVU3Hr1G039220.1	Barley	cytosol	30.15	31.83
KRH08483	Soybean	cytosol, nucleus, plastid	23.87	29.5
KRH70139	Soybean	nucleus	23.37	29.15
HORVU3Hr1G096110.1	Barley	mitochondrion	19.6	26.99
HORVU7Hr1G055010.1	Barley	cytosol	14.57	26.24
Bra028935.1-P	Field mustard	nucleus	36.18	25.35
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	21.36	23.16
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	20.6	22.97
CDY11934	Canola	nucleus	36.18	22.09
CDY23599	Canola	golgi, mitochondrion	32.66	21.35
HORVU1Hr1G004330.14	Barley	cytosol	21.36	21.2
HORVU4Hr1G060130.1	Barley	cytosol	18.09	20.45
HORVU0Hr1G019650.1	Barley	mitochondrion	15.58	19.56
HORVU3Hr1G041030.1	Barley	mitochondrion	18.34	18.86
HORVU3Hr1G115000.7	Barley	mitochondrion	18.09	18.37
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	15.33	18.32
HORVU6Hr1G072430.1	Barley	cytosol	14.32	15.66
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	13.82	14.86
HORVU7Hr1G092570.1	Barley	cytosol	12.06	12.53

Protein Annotations

EnsemblPlants:HORVU5Hr1G111530.1	EnsemblPlantsGene:HORVU5Hr1G111530	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B463A4F	UniProt:A0A287SQW8
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:636605343..636608891

Molecular Weight (calculated)

44397.7 Da

IEP (calculated)

4.379

GRAVY (calculated)

-1.028

Length

398 amino acids

Sequence
(BLAST)

001: MEEGEGQESR YWCHSCEEVI VPVEPEKKCP DCDGGFVEEM GSEGFETSTN VRSERNLSLW APLLLGMMGG SSRRSRPQRD MMDSSSDEDS RQARIRSALR
101: DTDDEDEEDD DDDSDRELED MIRRRRRRGS SLVRLLQTLR DDLRGLDGIG RDRDRDSERD RERERERRDR ERRERERARR ERERARERNR GGERTESLIL
201: INSNNEAIIL QGTFGPSDNQ ENSSNTSTGV SLGDYFLGPG LDMLLQRLAD SDLNRSGTPP AKKESVAALP TVNIQEVLGC TVCLEEFEMG TEAKEMPCQH
301: KFHSNCILPW LELHSSCPIC RFQLPTEESK NPCESGSGGG TVSADGDHAE SSNSDIGTDH DGGSVLDRPD VTSALNALFG DASSSSSSDE NGPGAPES

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.