Factsheet for Bra037109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08249	Canola	cytosol	98.8	98.51
Bra030854.1-P	Field mustard	nucleus	58.38	62.5
AT1G55530.2	Thale cress	nucleus	61.98	58.97
Bra037999.1-P	Field mustard	nucleus	46.71	53.79
Bra027436.1-P	Field mustard	nucleus	46.41	50.16
Bra011215.1-P	Field mustard	cytosol	32.93	47.41
Bra002823.1-P	Field mustard	nucleus	46.11	43.75
GSMUA_Achr11P...	Banana	nucleus	35.03	43.33
Bra019109.1-P	Field mustard	nucleus	39.82	41.3
Bra026444.1-P	Field mustard	nucleus	44.91	40.43
Zm00001d010635_P001	Maize	nucleus	35.03	37.5
Os05t0488800-01	Rice	nucleus	36.23	37.46
Os03t0812200-01	Rice	nucleus	39.82	36.04
Zm00001d038528_P001	Maize	cytosol	35.93	36.04
Bra001767.1-P	Field mustard	nucleus	22.46	35.05
TraesCS1D01G305300.1	Wheat	nucleus	34.73	34.94
TraesCS1B01G316300.1	Wheat	nucleus	34.43	34.64
Zm00001d013005_P002	Maize	nucleus	36.83	33.15
KXG37275	Sorghum	nucleus	36.23	31.59
TraesCS5D01G480800.1	Wheat	nucleus	37.72	31.19
HORVU5Hr1G111530.1	Barley	nucleus	37.13	31.16
KXG22238	Sorghum	plastid	36.23	31.11
TraesCS5B01G480100.1	Wheat	nucleus	37.43	31.09
TraesCS5A01G467700.1	Wheat	nucleus	37.43	30.94
HORVU1Hr1G068950.2	Barley	golgi	35.33	30.57
Bra028935.1-P	Field mustard	nucleus	47.9	28.17
Bra038246.1-P	Field mustard	nucleus	27.25	28.0
Bra035835.1-P	Field mustard	nucleus	27.25	27.83
Bra014684.1-P	Field mustard	nucleus	15.57	27.08
Bra004589.1-P	Field mustard	nucleus	19.76	27.05
Bra030136.1-P	Field mustard	cytosol	19.16	26.45
Bra000207.1-P	Field mustard	mitochondrion, nucleus	23.65	24.92
Bra007253.1-P	Field mustard	mitochondrion, nucleus	22.46	24.19
Bra037800.1-P	Field mustard	cytosol	20.66	22.85
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.65	21.18
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.06	20.62
Bra006709.1-P	Field mustard	plastid	23.35	19.85
Bra002559.1-P	Field mustard	plastid	23.35	19.65
Bra020313.1-P	Field mustard	plastid	22.75	19.54
Bra000143.1-P	Field mustard	nucleus	21.56	19.2
Bra005020.1-P	Field mustard	nucleus, plastid	18.56	18.18
Bra014266.1-P	Field mustard	nucleus	20.36	15.42
Bra005970.1-P	Field mustard	cytosol	12.57	14.48
Bra008671.1-P	Field mustard	nucleus	11.68	13.59
Bra009323.1-P	Field mustard	cytosol	13.77	12.14
Bra021467.1-P	Field mustard	nucleus	13.77	11.79
Bra013006.1-P	Field mustard	nucleus	14.07	11.27
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	11.68	9.82

Protein Annotations

EnsemblPlants:Bra037109.1	EnsemblPlants:Bra037109.1-P	EnsemblPlantsGene:Bra037109	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025476DD	UniProt:M4F7P8
MapMan:35.1	:	:	:	:	:

Description

AT1G55530 (E=2e-059) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:10142710..10143714

Molecular Weight (calculated)

36952.1 Da

IEP (calculated)

4.294

GRAVY (calculated)

-0.763

Length

334 amino acids

Sequence
(BLAST)

001: MEEATNATSY WCHMCSQTVN AVMTEDEIKC PFCRSGFVEE MDEDRRATTT SIWAPILMEM MNNSATRNQS AESVENENGN GRDLDSQLQE ILRRRGRRSS
101: VSVVQLLRGV RALQPESSSN RDDDDNNHPS NERLIVISPH HQIIAVPRSL VTDSMPDGSS LSDYFIGPGF EALLQRLAEN DPNRYGTPPA RKEDVESLAT
201: VKIQEPSLQC SVCLDDFEVG VEAKQMPCKH NFHADCLLPW LELHSSCPVC RYQLPTDETK TTADSATNDN NGVGESSSAS SSSSSQGTEN SDANRHEGEG
301: EEENDDGNRN AFSIPWPFSS LFSSSSSQDR NSSD

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.