Factsheet for Bra011215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28208	Canola	cytosol	100.0	100.0
Bra037999.1-P	Field mustard	nucleus	69.4	55.52
Bra037109.1-P	Field mustard	nucleus	47.41	32.93
Bra030854.1-P	Field mustard	nucleus	42.24	31.41
Bra027436.1-P	Field mustard	nucleus	39.22	29.45
AT1G55530.2	Thale cress	nucleus	43.53	28.77
Bra002823.1-P	Field mustard	nucleus	37.07	24.43
Bra001767.1-P	Field mustard	nucleus	22.41	24.3
Os03t0812200-01	Rice	nucleus	37.93	23.85
Zm00001d010635_P001	Maize	nucleus	31.9	23.72
Os05t0488800-01	Rice	nucleus	32.33	23.22
Zm00001d013005_P002	Maize	nucleus	36.64	22.91
KXG37275	Sorghum	nucleus	37.5	22.72
Bra019109.1-P	Field mustard	nucleus	31.03	22.36
HORVU5Hr1G111530.1	Barley	nucleus	37.07	21.61
GSMUA_Achr11P...	Banana	nucleus	25.0	21.48
TraesCS5B01G480100.1	Wheat	nucleus	37.07	21.39
TraesCS1B01G316300.1	Wheat	nucleus	30.6	21.39
TraesCS1D01G305300.1	Wheat	nucleus	30.6	21.39
TraesCS5D01G480800.1	Wheat	nucleus	37.07	21.29
TraesCS5A01G467700.1	Wheat	nucleus	36.64	21.04
Bra026444.1-P	Field mustard	nucleus	33.19	20.75
Zm00001d038528_P001	Maize	cytosol	29.74	20.72
Bra030136.1-P	Field mustard	cytosol	20.26	19.42
KXG22238	Sorghum	plastid	32.33	19.28
HORVU1Hr1G068950.2	Barley	golgi	31.03	18.65
Bra004589.1-P	Field mustard	nucleus	19.4	18.44
Bra038246.1-P	Field mustard	nucleus	24.14	17.23
Bra014684.1-P	Field mustard	nucleus	14.22	17.19
Bra035835.1-P	Field mustard	nucleus	23.71	16.82
Bra028935.1-P	Field mustard	nucleus	39.66	16.2
Bra037800.1-P	Field mustard	cytosol	20.69	15.89
Bra000207.1-P	Field mustard	mitochondrion, nucleus	21.12	15.46
Bra007253.1-P	Field mustard	mitochondrion, nucleus	18.53	13.87
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.55	13.4
Bra006709.1-P	Field mustard	plastid	22.41	13.23
Bra020313.1-P	Field mustard	plastid	21.55	12.85
Bra002559.1-P	Field mustard	plastid	21.98	12.85
Bra005020.1-P	Field mustard	nucleus, plastid	18.1	12.32
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	17.24	12.31
Bra000143.1-P	Field mustard	nucleus	19.83	12.27
Bra005970.1-P	Field mustard	cytosol	15.09	12.07
Bra009323.1-P	Field mustard	cytosol	18.97	11.61
Bra014266.1-P	Field mustard	nucleus	18.53	9.75
Bra008671.1-P	Field mustard	nucleus	11.64	9.41
Bra021467.1-P	Field mustard	nucleus	15.52	9.23
Bra013006.1-P	Field mustard	nucleus	15.95	8.87
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	14.22	8.31

Protein Annotations

EnsemblPlants:Bra011215.1	EnsemblPlants:Bra011215.1-P	EnsemblPlantsGene:Bra011215	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13923	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002546D8A	UniProt:M4D411	MapMan:35.2

Description

AT1G55530 (E=3e-033) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:+:3285872..3286570

Molecular Weight (calculated)

25715.2 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.515

Length

232 amino acids

Sequence
(BLAST)

001: MDEEENNAYR PIDSVLAPRF IQMMKNSARN GTTDMDSQLQ EILRRRGRRP VSIEQLLQGI RTGLTLAPAD DDTNNARDDD AGRERGRVIV TNPFNQIVAV
101: PSSAVSDTLR PVAGSLSEYF IGPEFEALRY GTPPARRDAV EALADDLLVL NPGIQCLVCL DYIEMNTTGK QMPCQHKFHS YCLLYWLQLH SSCPVCRCQL
201: RTAKDEADGG SFSSSSQGSE NNDQEEEGPM AA

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.