Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56022 | Canola | nucleus | 94.87 | 94.57 |
| Bra037109.1-P | Field mustard | nucleus | 62.5 | 58.38 |
| AT1G55530.2 | Thale cress | nucleus | 60.9 | 54.13 |
| Bra037999.1-P | Field mustard | nucleus | 44.55 | 47.93 |
| Bra027436.1-P | Field mustard | nucleus | 45.51 | 45.95 |
| GSMUA_Achr11P... | Banana | nucleus | 36.86 | 42.59 |
| Bra011215.1-P | Field mustard | cytosol | 31.41 | 42.24 |
| Bra002823.1-P | Field mustard | nucleus | 44.55 | 39.49 |
| Bra019109.1-P | Field mustard | nucleus | 40.38 | 39.13 |
| Bra026444.1-P | Field mustard | nucleus | 43.59 | 36.66 |
| Zm00001d010635_P001 | Maize | nucleus | 35.26 | 35.26 |
| Os05t0488800-01 | Rice | nucleus | 36.22 | 34.98 |
| Os03t0812200-01 | Rice | nucleus | 40.71 | 34.42 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 36.54 | 34.34 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 36.22 | 34.04 |
| Zm00001d013005_P002 | Maize | nucleus | 40.06 | 33.69 |
| Zm00001d038528_P001 | Maize | cytosol | 35.9 | 33.63 |
| KXG37275 | Sorghum | nucleus | 40.38 | 32.9 |
| Bra001767.1-P | Field mustard | nucleus | 22.44 | 32.71 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 40.38 | 31.66 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 40.06 | 31.09 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 40.06 | 30.94 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 39.74 | 30.69 |
| HORVU1Hr1G068950.2 | Barley | golgi | 36.86 | 29.79 |
| KXG22238 | Sorghum | plastid | 36.54 | 29.31 |
| Bra028935.1-P | Field mustard | nucleus | 47.44 | 26.06 |
| Bra014684.1-P | Field mustard | nucleus | 16.03 | 26.04 |
| Bra030136.1-P | Field mustard | cytosol | 20.19 | 26.03 |
| Bra038246.1-P | Field mustard | nucleus | 26.92 | 25.85 |
| Bra035835.1-P | Field mustard | nucleus | 26.92 | 25.69 |
| Bra004589.1-P | Field mustard | nucleus | 18.59 | 23.77 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 23.4 | 23.55 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 23.72 | 23.34 |
| Bra037800.1-P | Field mustard | cytosol | 22.12 | 22.85 |
| Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 25.96 | 21.72 |
| Bra002559.1-P | Field mustard | plastid | 27.24 | 21.41 |
| Bra020313.1-P | Field mustard | plastid | 25.96 | 20.82 |
| Bra006709.1-P | Field mustard | plastid | 25.96 | 20.61 |
| Bra000143.1-P | Field mustard | nucleus | 24.36 | 20.27 |
| Bra005020.1-P | Field mustard | nucleus, plastid | 21.79 | 19.94 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.19 | 19.38 |
| Bra005970.1-P | Field mustard | cytosol | 13.78 | 14.83 |
| Bra008671.1-P | Field mustard | nucleus | 13.14 | 14.29 |
| Bra014266.1-P | Field mustard | nucleus | 19.87 | 14.06 |
| Bra013006.1-P | Field mustard | nucleus | 17.63 | 13.19 |
| Bra009323.1-P | Field mustard | cytosol | 15.06 | 12.4 |
| Bra021467.1-P | Field mustard | nucleus | 15.06 | 12.05 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 12.5 | 9.82 |
Protein Annotations
| EnsemblPlants:Bra030854.1 | EnsemblPlants:Bra030854.1-P | EnsemblPlantsGene:Bra030854 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002547065 | UniProt:M4EPY3 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT1G55530 (E=3e-050) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA08:+:317652..318590
Molecular Weight (calculated)
34096.7 Da
IEP (calculated)
3.936
GRAVY (calculated)
-0.603
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEAGAVA VAYWCHMCSR TVDPLMEAEI KCPFCASGFV EEVAEEHDDD HRANNSSLLA PILMQVINES SLLTSNQSVD EDAQTESGND VDSQLQEILR
101: RRRARRSVSV MQLLDGDGDG DRERGSLIVV SGASLSEYFI GPGFEALLQR LTDNDPNRYG TPPAQKEAVE ALASVKIQEP TLQCSVCLDE FEIGVEAKEM
201: PCEHKFHGEC LLPWLELHSS CPVCRYELPS DETKTETART QPNGDGGGSE SSSFASIQEG SENSDGSHHP EEEEEEDSDD DGDDGVEFSI PWLLSSLFSS
301: SQDSSNPSSG TH
101: RRRARRSVSV MQLLDGDGDG DRERGSLIVV SGASLSEYFI GPGFEALLQR LTDNDPNRYG TPPAQKEAVE ALASVKIQEP TLQCSVCLDE FEIGVEAKEM
201: PCEHKFHGEC LLPWLELHSS CPVCRYELPS DETKTETART QPNGDGGGSE SSSFASIQEG SENSDGSHHP EEEEEEDSDD DGDDGVEFSI PWLLSSLFSS
301: SQDSSNPSSG TH
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.