Factsheet for Bra019382.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61251	Canola	cytosol	93.57	96.68
CDX99105	Canola	cytosol, plastid	83.38	95.99
AT3G46620.1	Thale cress	cytosol, plastid	84.99	80.25
Bra002559.1-P	Field mustard	plastid	71.31	67.0
Bra020313.1-P	Field mustard	plastid	69.17	66.32
Bra006709.1-P	Field mustard	plastid	66.76	63.36
Os03t0271600-01	Rice	plastid	39.14	52.33
EER95109	Sorghum	plastid	38.34	52.0
Zm00001d047824_P001	Maize	plastid	38.34	51.44
Zm00001d028590_P001	Maize	plastid	38.34	51.44
TraesCS4D01G209500.1	Wheat	plastid	38.34	51.07
TraesCS4B01G209100.1	Wheat	plastid	38.34	51.07
TraesCS4A01G095800.1	Wheat	cytosol	38.34	51.07
KRH10229	Soybean	nucleus	42.9	50.96
KRH23103	Soybean	nucleus	42.9	50.96
GSMUA_Achr7P15040_001	Banana	mitochondrion	42.9	50.63
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	44.77	47.58
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	48.79	47.15
GSMUA_Achr10P...	Banana	mitochondrion	42.36	46.88
KRH29763	Soybean	nucleus	44.5	45.98
KRH24759	Soybean	nucleus	44.24	45.71
Solyc06g005650.2.1	Tomato	extracellular	24.4	45.5
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.82	45.35
GSMUA_Achr2P19140_001	Banana	mitochondrion	42.63	43.92
GSMUA_Achr5P07070_001	Banana	nucleus	38.34	43.47
TraesCS3D01G532300.1	Wheat	cytosol	44.5	43.01
PGSC0003DMT400005512	Potato	mitochondrion	44.24	42.75
Zm00001d035677_P001	Maize	plastid	39.68	42.53
TraesCS3B01G595200.1	Wheat	cytosol	45.31	42.36
Os05t0110000-01	Rice	mitochondrion	37.53	42.04
Bra005020.1-P	Field mustard	nucleus, plastid	38.34	41.94
HORVU7Hr1G055010.1	Barley	cytosol	24.66	41.63
Bra000143.1-P	Field mustard	nucleus	41.29	41.07
HORVU4Hr1G060130.1	Barley	cytosol	38.61	40.91
TraesCS1A01G029800.1	Wheat	cytosol	43.7	40.85
TraesCS1B01G036900.1	Wheat	cytosol	43.43	40.6
TraesCS1D01G030300.1	Wheat	nucleus	43.7	40.55
HORVU1Hr1G004330.14	Barley	cytosol	43.16	40.15
GSMUA_Achr10P...	Banana	mitochondrion	42.63	39.55
EES17560	Sorghum	plastid	42.9	38.74
Zm00001d011076_P001	Maize	plastid	39.95	38.5
HORVU3Hr1G041030.1	Barley	mitochondrion	39.14	37.73
GSMUA_Achr10P...	Banana	nucleus	28.15	37.23
Os01t0972000-01	Rice	nucleus	32.98	36.83
HORVU3Hr1G115000.7	Barley	mitochondrion	36.73	34.95
Bra001767.1-P	Field mustard	nucleus	18.23	31.78
Bra004589.1-P	Field mustard	nucleus	18.23	27.87
Bra030136.1-P	Field mustard	cytosol	17.96	27.69
Bra000207.1-P	Field mustard	mitochondrion, nucleus	22.79	26.81
Bra038246.1-P	Field mustard	nucleus	22.79	26.15
Bra007253.1-P	Field mustard	mitochondrion, nucleus	21.72	26.13
Bra014684.1-P	Field mustard	nucleus	13.4	26.04
Bra030854.1-P	Field mustard	nucleus	21.72	25.96
Bra037999.1-P	Field mustard	nucleus	19.57	25.17
Bra027436.1-P	Field mustard	nucleus	20.64	24.92
Bra037800.1-P	Field mustard	cytosol	19.57	24.17
Bra035835.1-P	Field mustard	nucleus	20.91	23.85
Bra037109.1-P	Field mustard	nucleus	21.18	23.65
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.38	23.38
Bra002823.1-P	Field mustard	nucleus	21.45	22.73
Bra026444.1-P	Field mustard	nucleus	21.45	21.56
Bra011215.1-P	Field mustard	cytosol	13.4	21.55
Bra019109.1-P	Field mustard	nucleus	18.5	21.43
Bra005970.1-P	Field mustard	cytosol	13.4	17.24
Bra014266.1-P	Field mustard	nucleus	20.11	17.01
Bra013006.1-P	Field mustard	nucleus	18.77	16.79
Bra028935.1-P	Field mustard	nucleus	24.13	15.85
Bra009323.1-P	Field mustard	cytosol	15.82	15.57
Bra008671.1-P	Field mustard	nucleus	11.26	14.63
Bra021467.1-P	Field mustard	nucleus	15.01	14.36
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.87	12.09

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra019382	EnsemblPlants:Bra019382.1	EnsemblPlants:Bra019382.1-P	InterPro:DUF1117
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009414	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0010200
GO:GO:0016740	GO:GO:0019538	GO:GO:0051865	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DS89
PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002540D90	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT3G46620 (E=3e-139) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:24530128..24531249

Molecular Weight (calculated)

40793.0 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.462

Length

373 amino acids

Sequence
(BLAST)

001: MMPSRSATTT TAPTTTETTT SYWCYSCTRF VSVSNGGGYV LCPYCNGGFI EEVEDSSAAE APTTTTPVSE VEDSHRSVIR RRRSNRRTSF NPVIVLHGGA
101: GGGGERVENE EGDRRPYEFY YDDGSGSGLR ALPESVSEIL MGSGFERLLE QLSQIEASGN GIGRSGNPPA SKSAIESLPR VEMGELHIKA EANCAVCTEV
201: FEAGAEGREM PCKHIFHGDC IVPWLSIRNS CPVCRFELPS DPVQRSNEEE EHAVGMTIWR LPGGGFAVGR FNAAMREGER ILPVVLTEVD GGGLGSNEGP
301: RRISWVRDHG TPEISRNAAR AGRLRRAARG MISFMRRMRP NLRASSSSNV IDLDTNGESR IMNRSTSLIR RFF

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.