Factsheet for Bra006709.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88709	Canola	cytosol, plastid	98.47	98.22
Bra020313.1-P	Field mustard	plastid	81.17	82.01
Bra002559.1-P	Field mustard	plastid	81.68	80.86
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.36	66.76
AT5G59550.2	Thale cress	nucleus, plastid	81.17	62.3
Os03t0271600-01	Rice	plastid	37.91	53.41
GSMUA_Achr7P15040_001	Banana	mitochondrion	42.75	53.16
EER95109	Sorghum	plastid	36.9	52.73
KRH10229	Soybean	nucleus	41.73	52.23
Zm00001d028590_P001	Maize	plastid	36.9	52.16
Zm00001d047824_P001	Maize	plastid	36.9	52.16
TraesCS4D01G209500.1	Wheat	plastid	37.15	52.14
TraesCS4B01G209100.1	Wheat	plastid	37.15	52.14
TraesCS4A01G095800.1	Wheat	cytosol	37.15	52.14
KRH23103	Soybean	nucleus	41.48	51.91
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	46.82	47.67
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	42.49	47.58
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.48	47.38
KRH29763	Soybean	nucleus	43.26	47.09
Solyc06g005650.2.1	Tomato	extracellular	23.92	47.0
KRH24759	Soybean	nucleus	43.0	46.81
GSMUA_Achr10P...	Banana	mitochondrion	39.69	46.29
GSMUA_Achr5P07070_001	Banana	nucleus	37.66	44.98
PGSC0003DMT400005512	Potato	mitochondrion	44.02	44.82
Os05t0110000-01	Rice	mitochondrion	37.91	44.74
TraesCS3D01G532300.1	Wheat	cytosol	43.77	44.56
Zm00001d035677_P001	Maize	plastid	39.19	44.25
TraesCS3B01G595200.1	Wheat	cytosol	44.27	43.61
Bra005020.1-P	Field mustard	nucleus, plastid	37.66	43.4
TraesCS1A01G029800.1	Wheat	cytosol	43.77	43.11
GSMUA_Achr2P19140_001	Banana	mitochondrion	39.69	43.09
Bra000143.1-P	Field mustard	nucleus	40.97	42.93
EES17560	Sorghum	plastid	45.04	42.86
TraesCS1B01G036900.1	Wheat	cytosol	43.26	42.61
HORVU1Hr1G004330.14	Barley	cytosol	43.26	42.39
TraesCS1D01G030300.1	Wheat	nucleus	43.26	42.29
Zm00001d011076_P001	Maize	plastid	41.48	42.12
HORVU7Hr1G055010.1	Barley	cytosol	23.66	42.08
GSMUA_Achr10P...	Banana	mitochondrion	42.75	41.79
HORVU4Hr1G060130.1	Barley	cytosol	37.15	41.48
HORVU3Hr1G041030.1	Barley	mitochondrion	38.17	38.76
Os01t0972000-01	Rice	nucleus	32.32	38.02
GSMUA_Achr10P...	Banana	nucleus	27.23	37.94
HORVU3Hr1G115000.7	Barley	mitochondrion	36.9	36.99
Bra001767.1-P	Field mustard	nucleus	19.34	35.51
Bra038246.1-P	Field mustard	nucleus	23.41	28.31
Bra030136.1-P	Field mustard	cytosol	17.05	27.69
Bra014684.1-P	Field mustard	nucleus	12.98	26.56
Bra037999.1-P	Field mustard	nucleus	19.59	26.55
Bra035835.1-P	Field mustard	nucleus	21.88	26.3
Bra030854.1-P	Field mustard	nucleus	20.61	25.96
Bra000207.1-P	Field mustard	mitochondrion, nucleus	20.87	25.87
Bra004589.1-P	Field mustard	nucleus	16.03	25.82
Bra027436.1-P	Field mustard	nucleus	20.1	25.57
Bra007253.1-P	Field mustard	mitochondrion, nucleus	20.1	25.48
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.87	25.23
Bra019109.1-P	Field mustard	nucleus	19.34	23.6
Bra037109.1-P	Field mustard	nucleus	19.85	23.35
Bra002823.1-P	Field mustard	nucleus	20.87	23.3
Bra026444.1-P	Field mustard	nucleus	21.88	23.18
Bra037800.1-P	Field mustard	cytosol	17.56	22.85
Bra011215.1-P	Field mustard	cytosol	13.23	22.41
Bra014266.1-P	Field mustard	nucleus	20.61	18.37
Bra013006.1-P	Field mustard	nucleus	17.81	16.79
Bra005970.1-P	Field mustard	cytosol	11.96	16.21
Bra028935.1-P	Field mustard	nucleus	22.14	15.32
Bra009323.1-P	Field mustard	cytosol	14.5	15.04
Bra008671.1-P	Field mustard	nucleus	10.69	14.63
Bra021467.1-P	Field mustard	nucleus	13.99	14.1
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.21	12.09

Protein Annotations

EnsemblPlants:Bra006709.1	EnsemblPlants:Bra006709.1-P	EnsemblPlantsGene:Bra006709	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000254022A	UniProt:M4CR68	MapMan:35.1	:	:	:

Description

AT5G59550 (E=1e-132) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:4736721..4737902

Molecular Weight (calculated)

42664.0 Da

IEP (calculated)

5.763

GRAVY (calculated)

-0.466

Length

393 amino acids

Sequence
(BLAST)

001: MPSPSTPITS SYWCYSCTRF VSVWSESEQG ATTVSVSCPH CDGGFIEELT DPSSAAAAEL TPQPSTEVRS IISNRRSIIR RRRSTPHPSF NPVIVLQGGA
101: GERDDGEEEE ARDRRRRAFE FYYDDGSGLG LRPLPDSVSE ILMGSGFERL LEQLSQIDAA AGIGLGRSGN PPASKSAIES LPRVEISDCH VGAEVNCAVC
201: TEVFEGETEA REMPCKHIFH EDCIVPWLSI RNSCPVCRFE LPSDGNGEEG DNNPVGMTIW RLPGGGFAVG RFNAAMREGE RVLPVVLTEM DGGGIGGNSD
301: GPRRISWVRA NGTFESGSNN GGGGSGSGGR LRRMVRGMVS LMRRVRPNRG VSSSLNQLGL DSEVETRVMD RSNSVLRRYF GRSRSNRDSS VLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.