Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g098590.2.1 | Tomato | cytosol | 77.0 | 80.76 |
| KRH09399 | Soybean | nucleus | 49.1 | 51.49 |
| KRH38895 | Soybean | nucleus | 49.35 | 50.8 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 46.25 | 48.51 |
| PGSC0003DMT400069320 | Potato | nucleus | 46.25 | 44.53 |
| PGSC0003DMT400082489 | Potato | nucleus | 35.14 | 42.24 |
| PGSC0003DMT400058464 | Potato | nucleus | 27.91 | 33.96 |
| PGSC0003DMT400079301 | Potato | nucleus | 20.93 | 27.0 |
| PGSC0003DMT400046527 | Potato | nucleus | 24.81 | 26.67 |
| PGSC0003DMT400002370 | Potato | cytosol | 22.22 | 26.63 |
| PGSC0003DMT400061055 | Potato | extracellular | 19.64 | 25.5 |
| PGSC0003DMT400016233 | Potato | nucleus | 25.32 | 24.87 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 23.77 | 23.83 |
| PGSC0003DMT400081469 | Potato | nucleus | 21.71 | 22.22 |
| PGSC0003DMT400071362 | Potato | nucleus | 19.64 | 16.07 |
| PGSC0003DMT400063293 | Potato | nucleus | 17.05 | 15.28 |
| PGSC0003DMT400003515 | Potato | nucleus | 13.7 | 14.29 |
| PGSC0003DMT400068309 | Potato | cytosol | 13.18 | 12.81 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400026380 | EnsemblPlantsGene:PGSC0003DMG400010176 | EntrezGene:102600171 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400010176 | RefSeq:XP_006353939.1 | RefSeq:XP_015167039.1 | RefSeq:XP_015167040.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029552B9 | UniProt:M1AN35 | MapMan:35.1 | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010176]
Coordinates
chr3:-:44524549..44526282
Molecular Weight (calculated)
40610.1 Da
IEP (calculated)
4.260
GRAVY (calculated)
-0.680
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGAVGGG GAAGNQPQNY HCYQCEQTVT ITPSPNSELS CPNCNGTFLE ESETAPPSNP NPNTHPFFSA ATTDDLPFGG GFPIVFSSNA ASPAGGAVGF
101: DDLSALFGGM AGGSAALPGR SPNQFDPFAF LNNYFSSMRG GNIQLIFENH PDGGGGGAGG DFRIPGNLGD YFLGPGLEQL IQQLAENDPN RHGTPPAAKS
201: AVAGLPDIKI TEELLDSDSS QCAVCKDTFE LGMEAKQIPC KHIYHKDCIM PWLELHNSCP VCRYELPTDD PDYENRKTSQ QQTANTSNTH ANTSNNNTNN
301: NNTGVMFGGL EGGGDQDNSQ TPSTGERRLR IPLQWLFRGL GSPAETSNSG GASNDANNRN NNNTSNNAPS GESNPGSGGQ PRQEDLD
101: DDLSALFGGM AGGSAALPGR SPNQFDPFAF LNNYFSSMRG GNIQLIFENH PDGGGGGAGG DFRIPGNLGD YFLGPGLEQL IQQLAENDPN RHGTPPAAKS
201: AVAGLPDIKI TEELLDSDSS QCAVCKDTFE LGMEAKQIPC KHIYHKDCIM PWLELHNSCP VCRYELPTDD PDYENRKTSQ QQTANTSNTH ANTSNNNTNN
301: NNTGVMFGGL EGGGDQDNSQ TPSTGERRLR IPLQWLFRGL GSPAETSNSG GASNDANNRN NNNTSNNAPS GESNPGSGGQ PRQEDLD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.