Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045625_P001 | Maize | cytosol | 68.05 | 74.19 |
| EER89027 | Sorghum | nucleus | 69.23 | 72.9 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 66.57 | 68.18 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 66.86 | 67.46 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 66.27 | 62.75 |
| CDX82271 | Canola | cytosol | 31.36 | 49.77 |
| Bra001767.1-P | Field mustard | nucleus | 31.36 | 49.53 |
| CDY36069 | Canola | cytosol | 31.66 | 49.31 |
| CDY72364 | Canola | cytosol | 31.36 | 47.75 |
| Bra038246.1-P | Field mustard | nucleus | 41.12 | 42.77 |
| CDY33437 | Canola | cytosol | 40.53 | 42.28 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 39.94 | 41.8 |
| CDY24592 | Canola | nucleus | 39.65 | 41.74 |
| Bra035835.1-P | Field mustard | nucleus | 39.94 | 41.28 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 14.79 | 40.32 |
| Solyc04g009170.1.1 | Tomato | nucleus | 36.39 | 39.81 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 43.2 | 39.57 |
| PGSC0003DMT400082489 | Potato | nucleus | 36.98 | 38.82 |
| KRH36132 | Soybean | nucleus | 32.84 | 38.81 |
| KRG90622 | Soybean | nucleus | 33.73 | 38.26 |
| CDY22790 | Canola | nucleus | 30.47 | 38.15 |
| Os10t0487400-01 | Rice | mitochondrion, nucleus, plastid, vacuole | 39.94 | 36.49 |
| AT3G19950.2 | Thale cress | cytosol | 41.12 | 36.01 |
| CDY42507 | Canola | cytosol | 32.54 | 32.45 |
| Os03t0351800-01 | Rice | nucleus | 22.78 | 27.21 |
| Os05t0488800-01 | Rice | nucleus | 25.15 | 26.32 |
| Os03t0324900-01 | Rice | cytosol | 24.26 | 25.62 |
| Os03t0271600-01 | Rice | plastid | 21.01 | 25.45 |
| Os08t0487500-01 | Rice | plastid | 19.82 | 24.72 |
| Os02t0767600-00 | Rice | mitochondrion | 23.96 | 24.7 |
| Os05t0495000-00 | Rice | mitochondrion | 19.82 | 23.43 |
| Os01t0276600-01 | Rice | nucleus | 22.19 | 22.8 |
| Os03t0812200-01 | Rice | nucleus | 24.56 | 22.49 |
| Os01t0802000-01 | Rice | nucleus | 21.3 | 21.88 |
| Os01t0972000-01 | Rice | nucleus | 21.01 | 21.26 |
| Os05t0110000-01 | Rice | mitochondrion | 19.82 | 20.12 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 18.05 | 19.61 |
| Os02t0191500-01 | Rice | nucleus | 16.86 | 15.2 |
| Os12t0118700-01 | Rice | nucleus | 19.23 | 13.03 |
| Os11t0119200-01 | Rice | nucleus | 18.34 | 12.63 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:4339830 | EMBL:AK121897 | ProteinID:BAD67937.1 | ProteinID:BAD69377.1 |
| ProteinID:BAF18443.1 | ProteinID:BAS95698.1 | ProteinID:EAZ35517.1 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os06g0101300 |
| EnsemblPlants:Os06t0101300-01 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 |
| UniProt:Q5VME8 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000457CFC | RefSeq:XP_015644325.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING finger protein OsRFPH2-21, RING-H2 protein 21Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0101300-01)
Coordinates
chr6:+:142315..146642
Molecular Weight (calculated)
35192.8 Da
IEP (calculated)
5.399
GRAVY (calculated)
-0.300
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPAHAQR FYCHQCDRTV PIPPPTSPDA DVLCPFCGGG FVEELGEDIN PNPNPNPSPF LPHHPFFPFA SPSFDLRNPS DLAAFFGPPS PSPSPSPAAR
101: HFDPSNFLHD HFTGLLSGGA TIQIVLEGSS ASLPLGGAAA GPGGISLGDY FVGSGLEQLI QQLAENDPNR YGTPPAAKSA VAALPDVAVS ADMMAADGGA
201: QCAVCMDDFH LGAAAKQLPC KHVFHKDCIL PWLDLHSSCP VCRFELPTDD PHHAHPTLGS HRPAAPASAS ASPSPAPPPR LAERRFRISL PWPLRAAFGG
301: QAESSNPTNQ DPVGGSTDAS GSGNNNATGG HRGYDDLD
101: HFDPSNFLHD HFTGLLSGGA TIQIVLEGSS ASLPLGGAAA GPGGISLGDY FVGSGLEQLI QQLAENDPNR YGTPPAAKSA VAALPDVAVS ADMMAADGGA
201: QCAVCMDDFH LGAAAKQLPC KHVFHKDCIL PWLDLHSSCP VCRFELPTDD PHHAHPTLGS HRPAAPASAS ASPSPAPPPR LAERRFRISL PWPLRAAFGG
301: QAESSNPTNQ DPVGGSTDAS GSGNNNATGG HRGYDDLD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.