Factsheet for Os12t0118700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0119200-01	Rice	nucleus	90.78	92.26
TraesCS5B01G144700.1	Wheat	nucleus	67.54	66.08
TraesCS5A01G145800.1	Wheat	nucleus	67.54	66.08
TraesCS5D01G146400.1	Wheat	nucleus	66.53	65.35
Os06t0633500-01	Rice	cytosol, nucleus	9.82	39.52
GSMUA_Achr4P02460_001	Banana	nucleus	31.86	38.41
CDY03622	Canola	nucleus	28.66	32.06
Bra014266.1-P	Field mustard	nucleus	28.26	31.97
AT5G01980.1	Thale cress	nucleus	31.46	31.85
CDY58938	Canola	nucleus	28.06	31.75
PGSC0003DMT400071362	Potato	nucleus	28.86	30.44
KRH40635	Soybean	nucleus, plastid	32.67	29.58
KRH00522	Soybean	plastid	32.67	29.16
VIT_08s0056g00320.t01	Wine grape	mitochondrion	34.47	29.15
GSMUA_Achr11P...	Banana	cytosol	40.08	27.59
CDY01221	Canola	cytosol	12.02	27.52
Os03t0351800-01	Rice	nucleus	13.23	23.32
Os03t0271600-01	Rice	plastid	12.63	22.58
Os02t0727700-01	Rice	cytosol, nucleus, plastid	13.23	21.22
Os05t0488800-01	Rice	nucleus	13.43	20.74
Os06t0101300-01	Rice	nucleus	13.03	19.23
Os08t0487500-01	Rice	plastid	10.42	19.19
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	14.03	18.92
Os05t0495000-00	Rice	mitochondrion	10.82	18.88
Os05t0110000-01	Rice	mitochondrion	12.22	18.32
Os01t0802000-01	Rice	nucleus	11.62	17.63
Os03t0812200-01	Rice	nucleus	12.83	17.34
Os03t0324900-01	Rice	cytosol	10.82	16.88
Os01t0972000-01	Rice	nucleus	11.02	16.47
Os02t0767600-00	Rice	mitochondrion	10.82	16.46
Os01t0276600-01	Rice	nucleus	9.82	14.89
Os02t0191500-01	Rice	nucleus	9.62	12.8

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4351343	ProteinID:ABA95658.1	EMBL:AK073862	ProteinID:BAF29028.1
ProteinID:BAT15632.1	ProteinID:EEE52655.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os12g0118700	EnsemblPlants:Os12t0118700-01	PFAM:PF13639	PFscan:PS50089	UniProt:Q2QYH9
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0000681B54	RefSeq:XP_015619749.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12t0118700-01)

Coordinates

chr12:+:906322..908669

Molecular Weight (calculated)

56477.8 Da

IEP (calculated)

4.269

GRAVY (calculated)

-0.648

Length

499 amino acids

Sequence
(BLAST)

001: MSDHRTHASD CHPVASQPDV QCLVCTRPFT LDAQVTDTFE ALAICRDCKM TVLNDDERDE ITSTYRQNTR RRQISRTASI DFLEDAFLQE FSQLIDLARR
101: QGRETDIDSS SVAPQHASFN STPSQSQRWH ASDDESDGLN YVDSVFGEIE SAISLGDYGG DSDTSIEEHS VMTRRRISIQ LDNDSYMNTD TDIDPMNARL
201: DQWDSDDQED VEESGFDEIV NTMTQHQQQS HDIQLSGLSE DESEDGVWNW SVSVRQRANV TNLLDDMEEP EMRTTFVGNP DDYVDARQFE MLLEQFAEDN
301: DSRRGAPPAA TSFIENLPSV IISASHQTNG DVICPVCKDP IPTRARAKQL PCMHLYHSSC ILPWLSSRNT CPVCRYELPT DDAEYERSKQ ATTNVRDIQV
401: VEEISDEQEV QVTRQMAAGV IEETNTSEHN VRVDEQPNSA RRRSGWLFIA AAPVVSLIGF ALVLCFTNPA RSGRRQLYCR SPSATEVHVD TKKSWWSMF

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.