Factsheet for VIT_08s0056g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40635	Soybean	nucleus, plastid	50.17	53.72
KRH00522	Soybean	plastid	50.85	53.67
AT5G01980.1	Thale cress	nucleus	40.51	48.48
PGSC0003DMT400071362	Potato	nucleus	38.47	47.99
Bra014266.1-P	Field mustard	nucleus	35.59	47.62
CDY58938	Canola	nucleus	35.42	47.39
CDY03622	Canola	nucleus	35.59	47.09
CDY01221	Canola	cytosol	15.76	42.66
GSMUA_Achr4P02460_001	Banana	nucleus	28.64	40.82
TraesCS5D01G146400.1	Wheat	nucleus	32.2	37.4
TraesCS5A01G145800.1	Wheat	nucleus	31.69	36.67
TraesCS5B01G144700.1	Wheat	nucleus	31.69	36.67
Os11t0119200-01	Rice	nucleus	30.0	36.05
Os12t0118700-01	Rice	nucleus	29.15	34.47
GSMUA_Achr11P...	Banana	cytosol	34.41	28.0
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	13.9	24.55
VIT_08s0040g00590.t01	Wine grape	nucleus	12.71	23.89
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	15.25	23.32
VIT_06s0009g02350.t01	Wine grape	mitochondrion	12.37	21.73
VIT_17s0053g00320.t01	Wine grape	plastid	13.56	21.68
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	9.49	21.46
VIT_18s0001g03270.t01	Wine grape	nucleus	11.86	21.02
VIT_06s0004g00120.t01	Wine grape	nucleus	12.88	20.65
VIT_17s0000g08400.t01	Wine grape	nucleus	4.75	19.58
VIT_08s0007g00720.t01	Wine grape	plastid	15.08	17.25
VIT_17s0000g04730.t01	Wine grape	nucleus	11.36	15.26
VIT_12s0034g01390.t01	Wine grape	mitochondrion	11.36	14.86
VIT_14s0083g00710.t01	Wine grape	nucleus	9.83	14.83

Protein Annotations

EntrezGene:100255416	wikigene:100255416	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM473803	ProteinID:CAN75069
ProteinID:CAN75069.1	ProteinID:CCB55945	ProteinID:CCB55945.1	UniProt:F6HMS0	EMBL:FN595995	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100255416
wikigene:LOC100255416	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850
TIGR:TC63954	TMHMM:TMhelix	UniParc:UPI0002107FC6	ArrayExpress:VIT_08s0056g00320	EnsemblPlantsGene:VIT_08s0056g00320	EnsemblPlants:VIT_08s0056g00320.t01
unigene:Vvi.2065	RefSeq:XP_002265092	RefSeq:XP_002265092.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr8:-:453669..461038

Molecular Weight (calculated)

66549.2 Da

IEP (calculated)

4.380

GRAVY (calculated)

-0.727

Length

590 amino acids

Sequence
(BLAST)

001: MLRFCFARRL GFRGRVRHQK MDDSRSVPQE LSQSTVPNSS NSDSLLNHSD LPAACALCQK ILLPDDEGTG ELEPISMCGD CKFLFLEDLR SPAQDSHWRR
101: PPRVRRTRYS SSESIENLFS QHFSHMINLV RQNQSTVSGH EDQLVDVDPG ARLLQRPSSR TTPSGSRRWR RVPSDTESDG FDNLDSLYGE SESNISYGGY
201: RLFNGESDAI SFSAYGGDSD ASVDGHSFLD TEMYVQPDDG SNLNSDTDID PMHARLSQWN SDDQDEDDDE EEEEDDEWEE ADPEENVVES AEAEVHPRNF
301: FPSSSNGNNV LVNMRRRIHS PEFLGAIPWR LREGRQTFIS NFFSNLDESE VLPYFGNSED YLDARGFEEF LEHLAETDSS RRGAPPAAVS FVNSLPRVVI
401: NEEHEKRDGL VCAICKDVLS VGTEVNQLPC FHLYHPYCIL PWLTARNSCP LCRYELPTDD KDYEEGKLNA SIHEIPQQDL SDDSSSDTTD GAEADDTCEI
501: SPECRELADE VPVRNGSDRE GGRGRWFFLA AAPIAGLVGM ALVLWLRIPV TDRRGAIGRS NIQGQTQLHS SGSSLPNQRE NRSRRWWSLF

Best Arabidopsis Sequence Match ( AT5G01980.1 )
(BLAST)

001: MESQGPSNGH PMDISSNSIP SSACNLCGRV VQSASDDLEI FSLCVDCKFL LLEDFGTPAP PLARRQTIRR RRMRRRRRTT RHDSSESVGV GDLSSQQFTH
101: LISIARQSLS TVQASEDLRD DLRTSSHTTP SGSTRWRLFS ESESDDFDNF GETESNASFS LYRFPHADND TISFSAYGGE SDASTDRHAD IFVQPDDRSD
201: IDFDTDIDPM RAGLNQWNSD EEDREWEEGA GPSGVAGTRY RNYLASPSES YSSMTRFDSP ELERSFRQRI IERRHSLSRN IFTGLEDLDF SPYAANVGDY
301: LDERGFDELL EQLAESDNSR RGAPPASVSC VRNLPRVIIA EEHVMKGLVC AICKELFSLR NETTQLPCLH LYHAHCIVPW LSARNSCPLC RYELPTDDKD
401: YEEGKRNVLD VSEDSSSSDD GTESGEEEYV ERGESESGVS RVSRGRWLFL AAAPVVSLVG VVLAMWLSSP HRRGIAISHS QRENRTRRWL PFF

Arabidopsis Description

At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.