Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P03900_001 | Banana | cytosol | 96.61 | 85.5 |
| GSMUA_Achr1P17490_001 | Banana | unclear | 94.35 | 83.5 |
| HORVU2Hr1G124110.1 | Barley | cytosol | 90.4 | 78.82 |
| TraesCS2A01G580600.1 | Wheat | nucleus | 90.4 | 78.82 |
| TraesCS2B01G608100.1 | Wheat | cytosol | 90.4 | 78.82 |
| TraesCS2D01G592500.2 | Wheat | cytosol | 90.4 | 78.82 |
| TraesCS1B01G366600.1 | Wheat | cytosol | 89.27 | 77.83 |
| TraesCS1A01G355100.1 | Wheat | cytosol | 88.7 | 77.34 |
| TraesCS1D01G355400.1 | Wheat | cytosol | 88.7 | 77.34 |
| HORVU1Hr1G081030.2 | Barley | cytosol | 35.03 | 58.49 |
| HORVU0Hr1G001450.1 | Barley | plastid | 57.06 | 55.8 |
| GSMUA_AchrUn_... | Banana | plastid | 27.68 | 55.06 |
| GSMUA_Achr3P26260_001 | Banana | cytosol | 55.37 | 45.58 |
Protein Annotations
| MapMan:16.2.1.4.1 | Gene3D:3.90.79.10 | InterPro:Cleav_polyA_spec_factor_su5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005849 | GO:GO:0006139 | GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G20560_001 | EnsemblPlants:GSMUA_Achr9P20560_001 | EnsemblPlants:GSMUA_Achr9T20560_001 | UniProt:M0U215 | PFAM:PF13869 |
| PIRSF:PIRSF017888 | PANTHER:PTHR13047 | UniParc:UPI0002950A97 | : | : | : |
Description
Cleavage and polyadenylation specificity factor subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G20560_001]
Coordinates
chr9:+:24617345..24631327
Molecular Weight (calculated)
20227.7 Da
IEP (calculated)
9.786
GRAVY (calculated)
-0.379
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTSPVVNTY PLSNYTFGTK EPKMEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEMEG LKRKLCSKLA
101: ANSPSFQPNW QIGDPRQECK KLFLVHLSER EYFAVPKNLK LLAVPLFELY DNVQRYGPVI STIPQQLSRF QFNMVTS
101: ANSPSFQPNW QIGDPRQECK KLFLVHLSER EYFAVPKNLK LLAVPLFELY DNVQRYGPVI STIPQQLSRF QFNMVTS
001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS
Arabidopsis Description
CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.