Factsheet for HORVU4Hr1G052840.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011580.28
HORVU4Hr1G009390.7
HORVU5Hr1G060570.5
HORVU5Hr1G060590.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT3G06560.1	HORVU5Hr1G060570.5	AT2G01730.1	16897494
AT3G06560.1	HORVU5Hr1G060590.1	AT2G01730.1	16897494
AT3G06560.1	HORVU2Hr1G011580.28	AT5G51660.1	16897494
AT3G06560.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G123900.1	Wheat	nucleus	94.1	94.44
TraesCS4B01G180500.1	Wheat	nucleus	93.54	93.89
TraesCS4D01G182000.1	Wheat	nucleus	93.36	93.7
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	64.58	68.9
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	68.45	68.7
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	17.9	66.9
Os03t0313300-01	Rice	mitochondrion	63.28	62.82
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	18.08	61.64
OQU92698	Sorghum	cytosol, plasma membrane, plastid	67.53	60.5
HORVU0Hr1G029140.2	Barley	cytosol	49.63	58.61
HORVU0Hr1G035930.1	Barley	cytosol	49.63	58.61
HORVU2Hr1G016100.3	Barley	cytosol	47.23	48.3
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	45.39	44.17
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	40.59	44.09
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	38.19	43.22
Solyc12g099180.1.1	Tomato	cytosol	34.32	42.76
CDY24682	Canola	nucleus	37.08	41.1
AT3G06560.1	Thale cress	nucleus	38.19	40.83
VIT_05s0077g00650.t01	Wine grape	plastid	41.88	40.32
CDY05277	Canola	nucleus	37.45	39.57
Bra029588.1-P	Field mustard	nucleus	37.45	39.49
PGSC0003DMT400011757	Potato	nucleus	40.22	38.93
HORVU2Hr1G079870.2	Barley	nucleus	25.83	25.97
HORVU4Hr1G013750.2	Barley	nucleus	26.57	25.9
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	27.86	22.11
HORVU7Hr1G088370.13	Barley	nucleus	28.97	21.63
HORVU4Hr1G011370.8	Barley	nucleus	27.68	19.84
HORVU2Hr1G105500.3	Barley	cytosol	12.92	12.64

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
GO:GO:0046872	EnsemblPlantsGene:HORVU4Hr1G052840	EnsemblPlants:HORVU4Hr1G052840.1	UniProt:M0XD95	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF28	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI000295DE7F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:439085625..439091299

Molecular Weight (calculated)

61072.6 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.131

Length

542 amino acids

Sequence
(BLAST)

001: MVLDRPVGRP AFPRKPERRT LAPPRGTGPP PPPPIPPTPG VYLRGPPPLP PPGVILPRPI VVCLDLARMK QMDSSRSASL MKFLEDTGAS PSEEEDRRRE
101: RVILELHKIV MDWTKWVARD QGGEPWITSG TVLTFGSYDL GAYGSESDID AVCVGPCIAS LQHHFFVILR KMLEAKPEVS DLHSIESARV PLMRFKFNGV
201: SVDFPYAQLP VINAAEAIRA NDPCLLEKID EASWRCLSGV RVNRQIMQLV PNMKKFQVLL RCLKLWARKR GIHCHLVGFF AGIHLAVLGA YVCRRHPNAT
301: ANTLLCRFFE IFSHWPWPRP VSLHDQTPLW SPDGCSLMPI VMPCYPPEFC ASNVTKSTFN KIKEELWRGL SLTKDTSSTD VNWNWIFAPF PYAAKYKHFL
401: RIVLSAPTTE ELRDWVGWVK SRFRSLILKL ESLNIGCDPD PSEQVDHTIG EPNAVFLWGL IMYSNTQICT TSLKMDFMRI VTNNIYGKEK CAHSDIELSV
501: VVSMPQVPKS MSDHSAYLQK LPSLPPIMLG YPPMRRGCNA VG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.