Factsheet for HORVU4Hr1G013750.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G451500.1	Wheat	nucleus	89.93	91.24
TraesCS2B01G473400.1	Wheat	plastid	59.53	90.68
TraesCSU01G155200.1	Wheat	nucleus	88.31	90.26
TraesCS2A01G451700.1	Wheat	nucleus	88.31	90.26
TraesCS2A01G451800.1	Wheat	nucleus	87.95	89.56
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	90.29	89.32
HORVU2Hr1G079870.2	Barley	nucleus	71.04	73.28
Os04t0588350-00	Rice	nucleus, plastid	68.53	68.53
KXG27007	Sorghum	nucleus	64.21	65.38
Os01t0702900-01	Rice	extracellular	15.11	65.12
Zm00001d002505_P001	Maize	nucleus	62.05	62.5
HORVU2Hr1G105500.3	Barley	cytosol	44.96	45.13
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	48.74	39.68
HORVU7Hr1G088370.13	Barley	nucleus	51.26	39.26
HORVU4Hr1G011370.8	Barley	nucleus	44.06	32.41
HORVU0Hr1G035930.1	Barley	cytosol	26.08	31.59
HORVU0Hr1G029140.2	Barley	cytosol	26.08	31.59
HORVU2Hr1G016100.3	Barley	cytosol	25.36	26.6
HORVU4Hr1G052840.1	Barley	plastid	25.9	26.57

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A287NAB0	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	EnsemblPlantsGene:HORVU4Hr1G013750	EnsemblPlants:HORVU4Hr1G013750.2	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI000B47C9C1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:49424576..49426246

Molecular Weight (calculated)

61515.1 Da

IEP (calculated)

8.744

GRAVY (calculated)

-0.181

Length

556 amino acids

Sequence
(BLAST)

001: SARLTGGTSA IMSAISLVGP TPADLESSTQ LESLLREAGL YETSDELAAR EDVLRDLQAI VDRWVKRVTA QRGFPDGMVE QATGLVIPFG SYRLGVHGRG
101: SDIDALVVGP SYINRDHDFF AVLGGVLAET EAVTELQPVP RAHVPVIKMR FRGVQVDLLY ASVSLPVVPR DLDLRDRSVF RGMDLASARS LNGVRVADEL
201: LRLVPDAGAF RTTLRCIKHW AKARGIYSNV MGFLGGVGWA ILVARVCQLY PNASPSMLVP RFFKIFAQWK WPNPVLLQDI EHDDGGELAL RLPVWDPRRN
301: PRDKSHLMPV ITPAYPCMNS CYNVSHATLR TITEQLQIGN GICHEILKAG GAVGWEALFQ PFQFFKAYKS YLQVDVKVAG GEADLREWKG WVESRLRLLV
401: TRVEMATGGM LLCHPNPKAY AAKPHDHHCT ASFFVGLSKP QLQQQQQPQV PFDLRATTEG FKQEVYTYEF WRPGMELEVS HARRKDLPSY VLDQILPAGH
501: LKRRRAAESD SPPLLSAPGD SRDVKRAAGA GSSPERKRQC CPSSNIHPSA SVQGVV

Best Arabidopsis Sequence Match ( AT2G25850.1 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.