Factsheet for HORVU2Hr1G105500.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G473400.1	Wheat	plastid	30.14	45.75
HORVU4Hr1G013750.2	Barley	nucleus	45.13	44.96
TraesCS2D01G451500.1	Wheat	nucleus	43.32	43.8
TraesCSU01G155200.1	Wheat	nucleus	42.78	43.57
TraesCS2A01G451700.1	Wheat	nucleus	42.78	43.57
TraesCS2A01G451800.1	Wheat	nucleus	42.6	43.22
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	42.42	41.81
HORVU2Hr1G079870.2	Barley	nucleus	34.66	35.62
Os04t0588350-00	Rice	nucleus, plastid	34.48	34.35
KXG27007	Sorghum	nucleus	32.31	32.78
Zm00001d002505_P001	Maize	nucleus	31.05	31.16
HORVU7Hr1G088370.13	Barley	nucleus	27.8	21.21
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	25.63	20.79
HORVU4Hr1G011370.8	Barley	nucleus	23.83	17.46
HORVU0Hr1G035930.1	Barley	cytosol	11.55	13.94
HORVU0Hr1G029140.2	Barley	cytosol	11.55	13.94
HORVU4Hr1G052840.1	Barley	plastid	12.64	12.92
HORVU2Hr1G016100.3	Barley	cytosol	10.83	11.32
Os01t0702900-01	Rice	extracellular	0.72	3.1

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A287JBC3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:HORVU2Hr1G105500
EnsemblPlants:HORVU2Hr1G105500.3	InterPro:NuclTrfase_I-like_C	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
UniParc:UPI000B483DE1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:706870377..706872673

Molecular Weight (calculated)

43110.8 Da

IEP (calculated)

10.586

GRAVY (calculated)

-0.270

Length

554 amino acids

Sequence
(BLAST)

001: YRWHIRTTAI MSAISLVGPT PADLESSTRL ESLLREAGLY ETSDELAARE DVLRDLQAIV DRWVKRVTAQ RGFPDGMVEQ ATGLVIPFGX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVPR FFKIFAQWKW PNPVLLQDIE HDDGGEPALR LPVWDPRRNP
301: RDKSHLMPVI TPAYPCMNSC YNVSHATLRT ITEQLQIGNG ICQDILKAGG AVGWGALFQP FQFFKAYKSY LQVDVKVAGG EADLREWKGW VESRLRLLVT
401: RVEMSTSGML LCHPNPKAYA ASPMITTARH PSSWACPSHS HSSSSLRCRS TYARRRRGSS RRCTRTSSGG PGWSWRSRTP GGRTCRPTCW IRSSPLAISR
501: GGAPPRATLL RCCLLPATSR GWRQQAEQDR RLRGRGNAVP AAISSPALQY RALC

Best Arabidopsis Sequence Match ( AT2G25850.1 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.