Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G074500.1 | Wheat | cytosol | 95.09 | 95.43 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 95.3 | 94.97 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 95.09 | 94.43 |
| Zm00001d004153_P002 | Maize | nucleus | 15.0 | 83.27 |
| KXG25932 | Sorghum | cytosol | 81.29 | 80.56 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.25 | 73.23 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 66.43 | 67.28 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 11.28 | 66.81 |
| KRH09220 | Soybean | nucleus | 67.48 | 66.55 |
| KRH38714 | Soybean | nucleus | 67.13 | 66.11 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.32 | 64.74 |
| Solyc03g007100.2.1 | Tomato | nucleus | 64.05 | 64.14 |
| CDY46934 | Canola | cytosol | 64.89 | 63.95 |
| Bra022557.1-P | Field mustard | cytosol | 64.82 | 63.88 |
| AT5G51660.1 | Thale cress | cytosol | 64.4 | 63.73 |
| CDX91600 | Canola | cytosol | 64.47 | 63.54 |
| GSMUA_Achr11P... | Banana | cytosol | 9.6 | 60.89 |
| KRH04684 | Soybean | extracellular | 3.01 | 40.95 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | UniProt:A0A287H2T7 | InterPro:Cleavage/polyA-sp_fac_asu_C | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | EnsemblPlantsGene:HORVU2Hr1G011580 | EnsemblPlants:HORVU2Hr1G011580.28 | InterPro:IPR015943 |
| PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | UniParc:UPI000B481354 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:23215783..23309288
Molecular Weight (calculated)
153899.0 Da
IEP (calculated)
6.018
GRAVY (calculated)
-0.045
Length
1427 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYAAYKMMH WPTGIEHCAA GFITHCPSDA XXXXXXXXXX XXXXXXXXXX XXXXXXXXGP TPNLVVAAAN VLEVYAVRAE AAPPAEDGGA SASAFDGILG
0101: ARLELVCHYR LHGNVESMAV LSDGAENRRD SIALAFRDAK ITCLEFDDAI HGLRTSSMHC FEGPEWQHLK RGRESFAWGP VIKADPLGRC GAALIYGLQI
0201: AILKAAQVGQ SLVGEDEPTR ALSSSAVRVE SSYLIDLRAL DTNHVKDFTF VHGYIEPVLV ILHEREPTWA GRISSKHHTC MISAFSISMT LKQHPVIWSA
0301: ANLPHDAYQI LSVPPPISGV LVVCANSIHY HSQSTSCSLA LNNFSSQPDG SPEIPKINFH VELDAAKATW LSNDIVMFST KTGEMLLLTV VYDGRTVRRL
0401: DLMKSKASVI SSGATTIGSS FFFLGSRLGD SLLVQFSCGV ATSVLPDLID ERSGDIEGDV PFSKRLKRVP SDVLQDVTSV EELSFQNNML PNSIESAQKI
0501: SYVVRDKLIN VGPLKDFSYG LRVNADANAT GNAKQSNYEL VCCSGHGKNG ALSVLQQSIR PDLITEVELP SCRGIWTVYY KSSRAHTTED DEYHAYLIIS
0601: LENRTMVLET GDDLGEVTET VDYYVQGATI AAGNLFGRRR VIQVYATGAR VLDGSFMTQE LNFTAHSSES SSSSSEPLGV ASASIADPYV LLKMVDGTVQ
0701: LLVGDHSTCA LSISVPSIFT SLSEKISACT LYRDRGPEPW LRKTRSDAWL SSGIAEPIDG SGSSCQEQSD IYCIICYESG KLEIFEVPSF RCAFSVESFF
0801: SGEALLVDAK GRQDDTKVSL KKEAADSIRV VELAMHRWSG QFSRPFLFGL LNDGTFLCYH AYCYEGLESN VKDNSFSPAG SVDLASASDS RLRNLRFHRI
0901: SVDITLREDI SSLARPRITI FNNVGGYEGL FLSGTRPVWV MVCRQRFRVH PQLCDGPIEA FTVLHNINCC HGLIYVTSQG FLKICQLPEA YNYDNYWPVQ
1001: KIPLHGTPHQ VTYYAEQSLY PLIVSVPVVR PLNQVLSIMA DQDLIHHMDN DATSADDLQK TYTVEEFEVR VLELEKPSGR WETRSTIPMQ SFENALTVRI
1101: VTLHNTTTKE NETLMAIGTA YVQGEDVAAR GRVLLFSFTK SESSQNLVTE VYSKESKGAV SAVASLQGHL LIAAGPKITL SKWTGSELTA VAFYDAPLHV
1201: VSLNIVKNFV LFGDIHKSVY FLSWKEQGSQ LTLLAKDFGS LDCFATEFLI DGSTLNLAVS DSDKNVQIFY YAPKMVESWK GQKLLSRAEF HVGAHLTKFM
1301: RLQMLPTPGL ASEKTNRFAL LFGTLDGGIG CIAPIDELTF RRLQSLQRKL VDAVPHVCGL NPRSFRQFKS NGKAHRPGPD NIIDFELLAH YEMLSLEEQL
1401: DIAQQIGTTR AQIISNLSDI SLGTSFL
0101: ARLELVCHYR LHGNVESMAV LSDGAENRRD SIALAFRDAK ITCLEFDDAI HGLRTSSMHC FEGPEWQHLK RGRESFAWGP VIKADPLGRC GAALIYGLQI
0201: AILKAAQVGQ SLVGEDEPTR ALSSSAVRVE SSYLIDLRAL DTNHVKDFTF VHGYIEPVLV ILHEREPTWA GRISSKHHTC MISAFSISMT LKQHPVIWSA
0301: ANLPHDAYQI LSVPPPISGV LVVCANSIHY HSQSTSCSLA LNNFSSQPDG SPEIPKINFH VELDAAKATW LSNDIVMFST KTGEMLLLTV VYDGRTVRRL
0401: DLMKSKASVI SSGATTIGSS FFFLGSRLGD SLLVQFSCGV ATSVLPDLID ERSGDIEGDV PFSKRLKRVP SDVLQDVTSV EELSFQNNML PNSIESAQKI
0501: SYVVRDKLIN VGPLKDFSYG LRVNADANAT GNAKQSNYEL VCCSGHGKNG ALSVLQQSIR PDLITEVELP SCRGIWTVYY KSSRAHTTED DEYHAYLIIS
0601: LENRTMVLET GDDLGEVTET VDYYVQGATI AAGNLFGRRR VIQVYATGAR VLDGSFMTQE LNFTAHSSES SSSSSEPLGV ASASIADPYV LLKMVDGTVQ
0701: LLVGDHSTCA LSISVPSIFT SLSEKISACT LYRDRGPEPW LRKTRSDAWL SSGIAEPIDG SGSSCQEQSD IYCIICYESG KLEIFEVPSF RCAFSVESFF
0801: SGEALLVDAK GRQDDTKVSL KKEAADSIRV VELAMHRWSG QFSRPFLFGL LNDGTFLCYH AYCYEGLESN VKDNSFSPAG SVDLASASDS RLRNLRFHRI
0901: SVDITLREDI SSLARPRITI FNNVGGYEGL FLSGTRPVWV MVCRQRFRVH PQLCDGPIEA FTVLHNINCC HGLIYVTSQG FLKICQLPEA YNYDNYWPVQ
1001: KIPLHGTPHQ VTYYAEQSLY PLIVSVPVVR PLNQVLSIMA DQDLIHHMDN DATSADDLQK TYTVEEFEVR VLELEKPSGR WETRSTIPMQ SFENALTVRI
1101: VTLHNTTTKE NETLMAIGTA YVQGEDVAAR GRVLLFSFTK SESSQNLVTE VYSKESKGAV SAVASLQGHL LIAAGPKITL SKWTGSELTA VAFYDAPLHV
1201: VSLNIVKNFV LFGDIHKSVY FLSWKEQGSQ LTLLAKDFGS LDCFATEFLI DGSTLNLAVS DSDKNVQIFY YAPKMVESWK GQKLLSRAEF HVGAHLTKFM
1301: RLQMLPTPGL ASEKTNRFAL LFGTLDGGIG CIAPIDELTF RRLQSLQRKL VDAVPHVCGL NPRSFRQFKS NGKAHRPGPD NIIDFELLAH YEMLSLEEQL
1401: DIAQQIGTTR AQIISNLSDI SLGTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.