Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009712.1-P | |
| Bra010767.1-P | |
| Bra014881.1-P | |
| Bra022557.1-P | |
| Bra029588.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46934 | Canola | cytosol | 99.59 | 99.59 |
| AT5G51660.1 | Thale cress | cytosol | 89.64 | 90.01 |
| VIT_16s0022g01860.t01 | Wine grape | cytosol, nucleus, plastid | 71.69 | 73.67 |
| KRH09220 | Soybean | nucleus | 72.58 | 72.63 |
| KRH38714 | Soybean | nucleus | 72.58 | 72.53 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 29.97 | 71.26 |
| Zm00001d004153_P002 | Maize | nucleus | 12.5 | 70.43 |
| Solyc03g007100.2.1 | Tomato | nucleus | 67.89 | 68.98 |
| GSMUA_Achr11P... | Banana | cytosol, plasma membrane, plastid | 24.38 | 65.86 |
| TraesCS2B01G074500.1 | Wheat | cytosol | 64.02 | 65.19 |
| TraesCS2D01G060100.3 | Wheat | cytosol, nucleus, plastid | 64.43 | 65.15 |
| HORVU2Hr1G011580.28 | Barley | nucleus | 63.88 | 64.82 |
| TraesCS2A01G061100.3 | Wheat | nucleus | 64.02 | 64.51 |
| KXG25932 | Sorghum | cytosol | 63.05 | 63.4 |
| GSMUA_Achr11P... | Banana | cytosol | 9.19 | 59.11 |
| Zm00001d004154_P002 | Maize | plasma membrane | 49.59 | 59.09 |
| Os04t0252200-01 | Rice | cytosol, nucleus, plasma membrane | 8.7 | 52.28 |
Protein Annotations
| MapMan:16.2.1.2.1 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra022557 | EnsemblPlants:Bra022557.1 | EnsemblPlants:Bra022557.1-P | InterPro:Cleavage/polyA-sp_fac_asu_C |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR015943 |
| UniProt:M4E1A9 | PFAM:PF03178 | PFAM:PF10433 | PANTHER:PTHR10644 | PANTHER:PTHR10644:SF2 | UniParc:UPI00025471A5 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | SEG:seg | : | : | : | : |
Description
AT5G51660 (E=0.0) CPSF160, ATCPSF160 | CPSF160; nucleic acid binding
Coordinates
chrA02:-:8947717..8956212
Molecular Weight (calculated)
158362.0 Da
IEP (calculated)
6.280
GRAVY (calculated)
-0.111
Length
1448 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSFAAFKMMH WPTGVENCAS GYITHSISDT TPMQIPITSG DDLDPDWPAP PKRGICAVPN VVVTAANVLE VYVVRVQEEG NGASSLEPRG QRLAKRGGVL
0101: DGVSGVSLEL VCHYRLHGNV EWLAVLPMGG GNSTRGRDSI VVTFRDAKIS VLEFDDSIHS LRLNSMHCFE GPDWLHLKRG RESFPRGPLV KVDPQGRCGG
0201: VLVYGLQLII LKASQVGSGL VGDDDAFTSG GTISARVESS YIINLRDLGM KHVKDFVFLH GYIEPVIVIL QEEEHTWAGR VSWKHHTCML SALSINTTLK
0301: QHPVIWSAIN LPHDAYKLLA VPSPIGGVLV LCANTIHYHS QSASCALALN NYASSADSSQ ELPASSFSVE LDAAHGTWIS NDVALLSTKS GELLLLTLIY
0401: DGRAVQRLDL SKSKASVLAS DITSVGNSLF FLGSRLGDSL LVQYSCRSGP AASLPGLRDE DEDIEGESHQ AKRLRMSSDA FQDTVGNEEL SLFGSAPNNS
0501: DSSQKSFSFA VRDSLVNVGP VKDFAYGLRI NADANATGIS KQSNYELVCC SGHGKNGALS VLRQSIRPEM ITEVELGSCK GIWTVYHKSS RGHNVDSSKM
0601: AADEDEYHAY LIISLEARTM VLETADLLTE VTESVDYYVQ GRTIAAGNLF GRRRVIQVFE HGARILDGSF MNHELNFGAS NTESNSGSES STVASVSIAD
0701: PYVLLRMTDG SIRLLVGDPS TCTVSISTPS VLEGSKRKVS ACTLYHDKGP EPWLRKASTD AWLLSGVGEA VDSADGGPHD QGDIYCVLCY ESGALEIFDV
0801: PSFNCVFSVD KFASGRSHLS DMPIHELEYE LNKKSQDNVS ARNEDIVKTK VVELAMQRWS GHHTRPFLFA VLADGTILCY HAYLFEGVDG TNAENSVSSE
0901: NPAALNSSSS SKLRNLRFLR IPLDTSTREE TSDGVAAQRI TMFKNISGHQ GFFLSGSRPG WCMLFRERLR FHSQLCDGSI VAFTVLHNVN CNHGFIYVTS
1001: QGVLKICQLP SAPVYDNYWP VQKIPLKATP HQVTYYAEKN LYPLIVSYPV SKPLHQVLSS LVDQEAGQQI DNHNLSSDDL QRPYTVEEFE IRILEPERSG
1101: GPWETKTTIP MQSSEHALTV RVVTLLNAST AENETLLAVG TAYVQGEDVA ARGRVLLFSF GRNGDNSQSL VTEVYSKELK GVVSAVASIQ GHLLISSGPK
1201: VTLHKWNGTE LTGVAFFDPP LYVVSMNVVK NFILLGDVHK SVYFLSWKEQ GSQLSLLAKD FGSLDCMASE FLIDGSTLSL AVSDQQKNLQ IFYFAPKMSE
1301: SWKGQKLLSR AEFHVGAHVT KFLRLQMVES LSADKKSRYA SLFGTLDGSF GCIAPLDEVT FRRLQSLQKK LVDAVPHVAG LNPRSFRQFR SSGKARKPGP
1401: DSIIDCELLC HYEMLPLEEQ HALAQQIGTT RAQIFANLVE LSVGTSFL
0101: DGVSGVSLEL VCHYRLHGNV EWLAVLPMGG GNSTRGRDSI VVTFRDAKIS VLEFDDSIHS LRLNSMHCFE GPDWLHLKRG RESFPRGPLV KVDPQGRCGG
0201: VLVYGLQLII LKASQVGSGL VGDDDAFTSG GTISARVESS YIINLRDLGM KHVKDFVFLH GYIEPVIVIL QEEEHTWAGR VSWKHHTCML SALSINTTLK
0301: QHPVIWSAIN LPHDAYKLLA VPSPIGGVLV LCANTIHYHS QSASCALALN NYASSADSSQ ELPASSFSVE LDAAHGTWIS NDVALLSTKS GELLLLTLIY
0401: DGRAVQRLDL SKSKASVLAS DITSVGNSLF FLGSRLGDSL LVQYSCRSGP AASLPGLRDE DEDIEGESHQ AKRLRMSSDA FQDTVGNEEL SLFGSAPNNS
0501: DSSQKSFSFA VRDSLVNVGP VKDFAYGLRI NADANATGIS KQSNYELVCC SGHGKNGALS VLRQSIRPEM ITEVELGSCK GIWTVYHKSS RGHNVDSSKM
0601: AADEDEYHAY LIISLEARTM VLETADLLTE VTESVDYYVQ GRTIAAGNLF GRRRVIQVFE HGARILDGSF MNHELNFGAS NTESNSGSES STVASVSIAD
0701: PYVLLRMTDG SIRLLVGDPS TCTVSISTPS VLEGSKRKVS ACTLYHDKGP EPWLRKASTD AWLLSGVGEA VDSADGGPHD QGDIYCVLCY ESGALEIFDV
0801: PSFNCVFSVD KFASGRSHLS DMPIHELEYE LNKKSQDNVS ARNEDIVKTK VVELAMQRWS GHHTRPFLFA VLADGTILCY HAYLFEGVDG TNAENSVSSE
0901: NPAALNSSSS SKLRNLRFLR IPLDTSTREE TSDGVAAQRI TMFKNISGHQ GFFLSGSRPG WCMLFRERLR FHSQLCDGSI VAFTVLHNVN CNHGFIYVTS
1001: QGVLKICQLP SAPVYDNYWP VQKIPLKATP HQVTYYAEKN LYPLIVSYPV SKPLHQVLSS LVDQEAGQQI DNHNLSSDDL QRPYTVEEFE IRILEPERSG
1101: GPWETKTTIP MQSSEHALTV RVVTLLNAST AENETLLAVG TAYVQGEDVA ARGRVLLFSF GRNGDNSQSL VTEVYSKELK GVVSAVASIQ GHLLISSGPK
1201: VTLHKWNGTE LTGVAFFDPP LYVVSMNVVK NFILLGDVHK SVYFLSWKEQ GSQLSLLAKD FGSLDCMASE FLIDGSTLSL AVSDQQKNLQ IFYFAPKMSE
1301: SWKGQKLLSR AEFHVGAHVT KFLRLQMVES LSADKKSRYA SLFGTLDGSF GCIAPLDEVT FRRLQSLQKK LVDAVPHVAG LNPRSFRQFR SSGKARKPGP
1401: DSIIDCELLC HYEMLPLEEQ HALAQQIGTT RAQIFANLVE LSVGTSFL
0001: MSFAAYKMMH WPTGVENCAS GYITHSLSDS TLQIPIVSVH DDIEAEWPNP KRGIGPLPNV VITAANILEV YIVRAQEEGN TQELRNPKLA KRGGVMDGVY
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
0101: GVSLELVCHY RLHGNVESIA VLPMGGGNSS KGRDSIILTF RDAKISVLEF DDSIHSLRMT SMHCFEGPDW LHLKRGRESF PRGPLVKVDP QGRCGGVLVY
0201: GLQMIILKTS QVGSGLVGDD DAFSSGGTVS ARVESSYIIN LRDLEMKHVK DFVFLHGYIE PVIVILQEEE HTWAGRVSWK HHTCVLSALS INSTLKQHPV
0301: IWSAINLPHD AYKLLAVPSP IGGVLVLCAN TIHYHSQSAS CALALNNYAS SADSSQELPA SNFSVELDAA HGTWISNDVA LLSTKSGELL LLTLIYDGRA
0401: VQRLDLSKSK ASVLASDITS VGNSLFFLGS RLGDSLLVQF SCRSGPAASL PGLRDEDEDI EGEGHQAKRL RMTSDTFQDT IGNEELSLFG STPNNSDSAQ
0501: KSFSFAVRDS LVNVGPVKDF AYGLRINADA NATGVSKQSN YELVCCSGHG KNGALCVLRQ SIRPEMITEV ELPGCKGIWT VYHKSSRGHN ADSSKMAADE
0601: DEYHAYLIIS LEARTMVLET ADLLTEVTES VDYYVQGRTI AAGNLFGRRR VIQVFEHGAR ILDGSFMNQE LSFGASNSES NSGSESSTVS SVSIADPYVL
0701: LRMTDDSIRL LVGDPSTCTV SISSPSVLEG SKRKISACTL YHDKGPEPWL RKASTDAWLS SGVGEAVDSV DGGPQDQGDI YCVVCYESGA LEIFDVPSFN
0801: CVFSVDKFAS GRRHLSDMPI HELEYELNKN SEDNTSSKEI KNTRVVELAM QRWSGHHTRP FLFAVLADGT ILCYHAYLFD GVDSTKAENS LSSENPAALN
0901: SSGSSKLRNL KFLRIPLDTS TREGTSDGVA SQRITMFKNI SGHQGFFLSG SRPGWCMLFR ERLRFHSQLC DGSIAAFTVL HNVNCNHGFI YVTAQGVLKI
1001: CQLPSASIYD NYWPVQKIPL KATPHQVTYY AEKNLYPLIV SYPVSKPLNQ VLSSLVDQEA GQQLDNHNMS SDDLQRTYTV EEFEIQILEP ERSGGPWETK
1101: AKIPMQTSEH ALTVRVVTLL NASTGENETL LAVGTAYVQG EDVAARGRVL LFSFGKNGDN SQNVVTEVYS RELKGAISAV ASIQGHLLIS SGPKIILHKW
1201: NGTELNGVAF FDAPPLYVVS MNVVKSFILL GDVHKSIYFL SWKEQGSQLS LLAKDFESLD CFATEFLIDG STLSLAVSDE QKNIQVFYYA PKMIESWKGL
1301: KLLSRAEFHV GAHVSKFLRL QMVSSGADKI NRFALLFGTL DGSFGCIAPL DEVTFRRLQS LQKKLVDAVP HVAGLNPLAF RQFRSSGKAR RSGPDSIVDC
1401: ELLCHYEMLP LEEQLELAHQ IGTTRYSILK DLVDLSVGTS FL
Arabidopsis Description
CPSF160Cleavage and polyadenylation specificity factor subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.