Factsheet for Bra009712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000713.1-P
Bra009712.1-P
Bra010767.1-P
Bra012994.1-P
Bra014881.1-P
Bra022557.1-P
Bra026637.1-P
Bra028900.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23880.1	Bra010767.1-P	AT1G30460.1	16897494
AT5G23880.1	Bra014881.1-P	AT1G30460.1	16897494
AT5G23880.1	Bra010767.1-P	AT1G30460.1	18479511
AT5G23880.1	Bra014881.1-P	AT1G30460.1	18479511
AT5G23880.1	Bra026637.1-P	AT2G01730.1	16897494
AT5G23880.1	Bra026637.1-P	AT2G01730.1	18479511
AT5G23880.1	Bra000713.1-P	AT4G10500.1	21798944
AT5G23880.1	Bra028900.1-P	AT5G01400.1	17008405
AT5G23880.1	Bra009712.1-P	AT5G23880.1	16897494
AT5G23880.1	Bra022557.1-P	AT5G51660.1	16897494
AT5G23880.1	Bra022557.1-P	AT5G51660.1	17008405
AT5G23880.1	Bra022557.1-P	AT5G51660.1	18479511
AT5G23880.1	Bra012994.1-P	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88053	Canola	cytosol	99.73	99.73
AT5G23880.1	Thale cress	cytosol	93.37	93.37
KRH38460	Soybean	cytosol	77.81	77.81
KRH08941	Soybean	cytosol, nucleus	77.4	77.51
VIT_16s0050g00590.t01	Wine grape	cytosol	76.73	76.62
Solyc03g025540.2.1	Tomato	nucleus	75.78	75.78
KRH30256	Soybean	cytosol	68.2	74.56
GSMUA_Achr1P15280_001	Banana	cytosol	72.26	72.65
Os09t0569400-01	Rice	cytosol	71.45	71.54
EER93127	Sorghum	cytosol	70.91	71.0
TraesCS5B01G462500.2	Wheat	cytosol	70.91	70.91
TraesCS5D01G464200.1	Wheat	cytosol	70.64	70.73
TraesCS5A01G453700.5	Wheat	cytosol	70.64	70.64
Zm00001d044552_P006	Maize	cytosol, plasma membrane	70.77	68.28
KRH30262	Soybean	cytosol	50.34	66.79
HORVU5Hr1G109220.1	Barley	plastid	70.64	66.24
Bra026637.1-P	Field mustard	cytosol	16.78	20.16
Bra031460.1-P	Field mustard	cytosol	18.0	19.16

Protein Annotations

MapMan:16.2.1.2.2	Gene3D:3.60.15.10	InterPro:Beta_Casp	EnsemblPlantsGene:Bra009712	EnsemblPlants:Bra009712.1	EnsemblPlants:Bra009712.1-P
InterPro:CPSF2	InterPro:CPSF2_MBL	ncoils:Coil	InterPro:Cpsf2_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005737	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0035194
GO:GO:0040029	InterPro:IPR036866	UniProt:M4CZR5	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996
PFAM:PF13299	PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF5	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro
SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000253F109	:	:

Description

AT5G23880 (E=0.0) EMB1265, CPSF100, ESP5, ATCPSF100 | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding

Coordinates

chrA06:+:16698564..16703398

Molecular Weight (calculated)

81859.5 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.153

Length

739 amino acids

Sequence
(BLAST)

001: MGTSVQVSPL CGVYNENPLA YLVSIDGFNF LLDCGWNDLF DPSLLEPLSR VASTVDAVLL SHPDTLHLGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QYLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNFHLSGK GEGIVIAPHV AGHMLGGSIW KITKDGEEVV YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYNALYTNQT QSHHRDTEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRAFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFARDIF VEWANDPRNL VLFTETGQFG TLARMLQAAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GPDDNSSEPM VIDTKTTHDV VGSHGPAYKD ILIDGFVPPS SSIAPMFPFY DNTADWDEYG EVINPDDYVI KDEDMDRGAM
501: HAGGDVDGRL DEATASLMLD TRPSKVISNE LIVTVSCSLV KIDYEGRSDG RSIKSTIAHV SPLKLVLVHA TAEATEHLKQ HCLNSICPHV YAPKIEETID
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ESEKRCLQPM ASAAAPHKPV LVGDLKMQDF KQFLASKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Best Arabidopsis Sequence Match ( AT5G23880.1 )
(BLAST)

001: MGTSVQVTPL CGVYNENPLS YLVSIDGFNF LIDCGWNDLF DTSLLEPLSR VASTIDAVLL SHPDTLHIGA LPYAMKQLGL SAPVYATEPV HRLGLLTMYD
101: QFLSRKQVSD FDLFTLDDID SAFQNVIRLT YSQNYHLSGK GEGIVIAPHV AGHMLGGSIW RITKDGEDVI YAVDYNHRKE RHLNGTVLQS FVRPAVLITD
201: AYHALYTNQT ARQQRDKEFL DTISKHLEVG GNVLLPVDTA GRVLELLLIL EQHWSQRGFS FPIYFLTYVS SSTIDYVKSF LEWMSDSISK SFETSRDNAF
301: LLRHVTLLIN KTDLDNAPPG PKVVLASMAS LEAGFAREIF VEWANDPRNL VLFTETGQFG TLARMLQSAP PPKFVKVTMS KRVPLAGEEL IAYEEEQNRL
401: KREEALRASL VKEEETKASH GSDDNSSEPM IIDTKTTHDV IGSHGPAYKD ILIDGFVPPS SSVAPMFPYY DNTSEWDDFG EIINPDDYVI KDEDMDRGAM
501: HNGGDVDGRL DEATASLMLD TRPSKVMSNE LIVTVSCSLV KMDYEGRSDG RSIKSMIAHV SPLKLVLVHA IAEATEHLKQ HCLNNICPHV YAPQIEETVD
601: VTSDLCAYKV QLSEKLMSNV IFKKLGDSEV AWVDSEVGKT ERDMRSLLPM PGAASPHKPV LVGDLKIADF KQFLSSKGVQ VEFAGGGALR CGEYVTLRKV
701: GPTGQKGGAS GPQQILIEGP LCEDYYKIRD YLYSQFYLL

Arabidopsis Description

CPSF100Cleavage and polyadenylation specificity factor subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.