CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65137	Canola	cytosol, nucleus, plastid	60.71	60.71
CDY52248	Canola	cytosol, nucleus, plastid	60.71	60.71
VIT_13s0073g00320.t01	Wine grape	cytosol	13.1	18.64
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	60.71	14.91
Solyc06g066470.2.1	Tomato	nucleus	59.52	10.57
CDY58017	Canola	cytosol, nucleus, plasma membrane	29.76	8.5
CDX68897	Canola	nucleus	65.48	7.59
CDX75292	Canola	nucleus	65.48	7.54
KRH44269	Soybean	nucleus	63.1	7.53
CDX77017	Canola	nucleus	65.48	7.32
KRH47201	Soybean	nucleus	60.71	7.24
CDY35331	Canola	nucleus	65.48	7.22
CDY17685	Canola	nucleus	50.0	6.21
CDX81855	Canola	nucleus	52.38	6.2
CDY21725	Canola	nucleus	52.38	6.19
CDX83877	Canola	nucleus	52.38	6.18
CDX96740	Canola	nucleus	52.38	6.17
CDX77811	Canola	nucleus	50.0	6.06
CDY24682	Canola	nucleus	32.14	5.52
CDY05277	Canola	nucleus	32.14	5.26

Protein Annotations

MapMan:35.2	GO:A0A078JUW5	UniProt:A0A078JUW5	EnsemblPlants:CDY69371	ProteinID:CDY69371	ProteinID:CDY69371.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004652	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0043631	EnsemblPlantsGene:GSBRNA2T00087052001	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	UniParc:UPI0004EDE386	:	:	:	:

Description

BnaCnng63200DBnaCnng63200D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUW5]

Coordinates

chrLK039261:-:2..3270

Molecular Weight (calculated)

9266.1 Da

IEP (calculated)

4.163

GRAVY (calculated)

-0.105

Length

84 amino acids

Sequence
(BLAST)

1: MYQPRDILIL EGEPETHMPD AMRYMGPGAD IVTLCIGPSY VNREVALDLD VSNSSVLCNV DEQTARSLNG GRVADQILKL VQNF

Best Arabidopsis Sequence Match ( AT4G32850.11 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQVIKLPHSS YHKISSVENI

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.