Factsheet for VIT_13s0073g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042602	Potato	cytosol, nucleus, peroxisome	77.97	13.45
CDY69371	Canola	cytosol	18.64	13.1
Solyc06g066470.2.1	Tomato	nucleus	76.27	9.51
VIT_09s0002g03380.t01	Wine grape	cytosol	86.44	6.75
VIT_11s0016g03040.t01	Wine grape	nucleus	66.1	6.52
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	59.32	5.38
VIT_05s0077g00650.t01	Wine grape	plastid	47.46	4.97
VIT_01s0011g04320.t01	Wine grape	nucleus	59.32	4.89

Protein Annotations

MapMan:16.2.1.1.1	Gene3D:3.30.460.10	ProteinID:CCB49567	ProteinID:CCB49567.1	UniProt:F6HBH7	EMBL:FN595510
GO:GO:0003674	GO:GO:0003824	GO:GO:0004652	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0043631	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolyA_polymerase	SUPFAM:SSF81301
UniParc:UPI000210844B	ArrayExpress:VIT_13s0073g00320	EnsemblPlantsGene:VIT_13s0073g00320	EnsemblPlants:VIT_13s0073g00320.t01	:	:

Description

No Description!

Coordinates

chr13:+:13718660..13719280

Molecular Weight (calculated)

6655.1 Da

IEP (calculated)

3.594

GRAVY (calculated)

0.449

Length

59 amino acids

Sequence
(BLAST)

1: MEEIIELQPI PDVHIPVMKF KFDGISIDLP YASISLLVVP EDLDISDLSV LYNIDEPIT

Best Arabidopsis Sequence Match ( AT4G32850.8 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRHA IDVKKTGDFN SNCCVGQTTE SRSFW

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.