Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0073g00320.t01 | Wine grape | cytosol | 6.75 | 86.44 |
| Solyc06g066470.2.1 | Tomato | nucleus | 50.26 | 80.34 |
| PGSC0003DMT400042602 | Potato | cytosol, nucleus, peroxisome | 36.11 | 79.82 |
| KRH47201 | Soybean | nucleus | 63.36 | 68.04 |
| KRH44269 | Soybean | nucleus | 63.23 | 67.9 |
| VIT_11s0016g03040.t01 | Wine grape | nucleus | 48.94 | 61.87 |
| VIT_17s0000g03120.t01 | Wine grape | cytosol, nucleus, plastid | 48.28 | 56.07 |
| VIT_01s0011g04320.t01 | Wine grape | nucleus | 46.96 | 49.58 |
| VIT_05s0077g00650.t01 | Wine grape | plastid | 24.34 | 32.68 |
Protein Annotations
| Gene3D:1.10.1410.10 | EntrezGene:100263460 | wikigene:100263460 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 |
| EMBL:AM453602 | ProteinID:CAN69980 | ProteinID:CAN69980.1 | ProteinID:CCB59415 | ProteinID:CCB59415.1 | UniProt:F6HY92 |
| EMBL:FN596494 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006378 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| GO:GO:0031123 | GO:GO:0043631 | EntrezGene:LOC100263460 | wikigene:LOC100263460 | InterPro:NuclTrfase_I-like_C | PFAM:PF01909 |
| PFAM:PF04926 | PFAM:PF04928 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF22 | InterPro:PolA_pol_RNA-bd_dom | InterPro:PolA_pol_cen_dom |
| InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 | TIGR:TC62786 |
| UniParc:UPI0002109FAD | ArrayExpress:VIT_09s0002g03380 | EnsemblPlantsGene:VIT_09s0002g03380 | EnsemblPlants:VIT_09s0002g03380.t01 | unigene:Vvi.7501 | RefSeq:XP_002277939 |
| RefSeq:XP_002277939.1 | RefSeq:XP_019077777.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:+:3049315..3057900
Molecular Weight (calculated)
84517.5 Da
IEP (calculated)
5.128
GRAVY (calculated)
-0.351
Length
756 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSKGLGDS PPRQSVKQYG VTKPISVAGP TEVDIQRSLE LEKFLVDAGL YESKEEAIKR AEVLDRLGQI VKDWVKQLTR LRGYTDQMVE DANAVLFTFG
101: SYRLGVHGPG TDIDTLCIGP SYVSREEDFF FILHNILADM EEVTELQPVP DAHVPVMKFK FDGISIDLLY ASISLLVVPE DLDISDLSVL YNIDEPTVRS
201: LNGCRVADQI LKLVPNVEHF CTTLRCLKFW AKRRGVYSNV TGFLGGVNWA LLVARVCQLY PNAVPSMLVS RFFRVYTQWR WPNPVMLCAI EEDELGFSVW
301: DPRKNPRDRT HHMPIITPAY PCMNSSYNVS ISTLRVMMEQ FQYGNKICEG IELSNAQWGA LFEPYLFFES YKNYLQVDIV AVDIDDLRAW KGWVESRLRQ
401: LTLMIERDTF GKLQCHPYPH EYVDTSKQCS HCAFFMGLQR KQGEIIQEGQ QFDIRGTVDE FRHSINMYMF WKPGMEIYVS HVRRKQIPSY VFPEGYKRSR
501: PQRPVNQQQG DEACRTGSSE KHMKRKKDPE EVDVEQDKAA KRLTISPQRQ DSVSPEIISH RFSSSSQECS ASGSAKAKEI VEGDRKCQVG MGKLEDLVST
601: NVENIEMGAI GRGMRWMKAD EKGNIEPDKS DKPIPCTGNA EAGSVSNSSV VTSITSEVSS SGDVGFESVG GSSDGNTGSV EGSNILGISQ GDSCEADSEL
701: LLENGCVNAK EGFQDGLHEE LEPNAALGIV LKSRGGVDSE PVPKSVLSRL SLTSTA
101: SYRLGVHGPG TDIDTLCIGP SYVSREEDFF FILHNILADM EEVTELQPVP DAHVPVMKFK FDGISIDLLY ASISLLVVPE DLDISDLSVL YNIDEPTVRS
201: LNGCRVADQI LKLVPNVEHF CTTLRCLKFW AKRRGVYSNV TGFLGGVNWA LLVARVCQLY PNAVPSMLVS RFFRVYTQWR WPNPVMLCAI EEDELGFSVW
301: DPRKNPRDRT HHMPIITPAY PCMNSSYNVS ISTLRVMMEQ FQYGNKICEG IELSNAQWGA LFEPYLFFES YKNYLQVDIV AVDIDDLRAW KGWVESRLRQ
401: LTLMIERDTF GKLQCHPYPH EYVDTSKQCS HCAFFMGLQR KQGEIIQEGQ QFDIRGTVDE FRHSINMYMF WKPGMEIYVS HVRRKQIPSY VFPEGYKRSR
501: PQRPVNQQQG DEACRTGSSE KHMKRKKDPE EVDVEQDKAA KRLTISPQRQ DSVSPEIISH RFSSSSQECS ASGSAKAKEI VEGDRKCQVG MGKLEDLVST
601: NVENIEMGAI GRGMRWMKAD EKGNIEPDKS DKPIPCTGNA EAGSVSNSSV VTSITSEVSS SGDVGFESVG GSSDGNTGSV EGSNILGISQ GDSCEADSEL
701: LLENGCVNAK EGFQDGLHEE LEPNAALGIV LKSRGGVDSE PVPKSVLSRL SLTSTA
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRASTS RLSLKSTV
Arabidopsis Description
nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.