Factsheet for VIT_17s0000g03120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58017	Canola	cytosol, nucleus, plasma membrane	32.1	71.09
Zm00001d031424_P001	Maize	cytosol	17.2	65.5
KRH39125	Soybean	nucleus	75.73	65.13
KRH48590	Soybean	nucleus	74.04	63.67
GSMUA_AchrUn_...	Banana	nucleus	72.66	63.66
Zm00001d044377_P001	Maize	cytosol	14.9	62.58
Zm00001d040140_P001	Maize	cytosol	17.36	62.43
Os06t0319600-01	Rice	cytosol	12.29	62.02
CDX81855	Canola	nucleus	67.43	61.83
CDX83877	Canola	nucleus	67.43	61.66
CDY21725	Canola	nucleus	67.13	61.46
CDX96740	Canola	nucleus	67.13	61.29
VIT_01s0011g04320.t01	Wine grape	nucleus	67.28	61.17
Zm00001d016073_P001	Maize	cytosol	17.82	61.05
AT1G17980.1	Thale cress	nucleus	66.67	60.87
Bra031010.1-P	Field mustard	nucleus	63.9	60.38
Bra016573.1-P	Field mustard	nucleus	64.06	60.26
KRH60473	Soybean	cytosol	54.53	59.56
VIT_13s0073g00320.t01	Wine grape	cytosol	5.38	59.32
Bra024894.1-P	Field mustard	nucleus	60.83	58.93
CDY17685	Canola	nucleus	60.98	58.73
CDX77811	Canola	nucleus	61.6	57.86
TraesCS4B01G068100.1	Wheat	nucleus	58.53	52.26
TraesCS4A01G246800.1	Wheat	nucleus	58.37	52.2
TraesCS4D01G067100.1	Wheat	nucleus	58.37	52.13
VIT_11s0016g03040.t01	Wine grape	nucleus	47.0	51.17
HORVU4Hr1G011370.8	Barley	nucleus	58.06	50.0
Zm00001d013599_P016	Maize	nucleus	57.3	49.73
Zm00001d033448_P004	Maize	nucleus	56.68	49.53
EER93704	Sorghum	cytosol	56.99	49.47
VIT_09s0002g03380.t01	Wine grape	cytosol	56.07	48.28
VIT_05s0077g00650.t01	Wine grape	plastid	25.96	30.02

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	ProteinID:CBI15506	ProteinID:CBI15506.3
UniProt:D7SJ45	EMBL:FN594950	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
GO:GO:0045824	GO:GO:0048366	GO:GO:0048451	InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI0001BE0A8E
ArrayExpress:VIT_17s0000g03120	EnsemblPlantsGene:VIT_17s0000g03120	EnsemblPlants:VIT_17s0000g03120.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:3008089..3020290

Molecular Weight (calculated)

73395.7 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.398

Length

651 amino acids

Sequence
(BLAST)

001: MSNLGLNNRN NSGQRLGITE PISLGGPNEL DVTKTQELEK FLAAAGLYES QEEAVSREEV LGRLDQIVKI WVKAISRAKG LNEQLVQEAN AKIFTFGSYR
101: LGVHGPGADI DTLCVGPRHA TREEDFFGEL HKMLSEMPEV TELHPVPDAH VPVMRFKFSG VSIDLLYAKL SLWVIPEDLD VSQDSILQNA DEQTVRSLNG
201: CRVTDQILRL VPNIQNFRTT LRFMRFWAKR RGVYSNVAGF LGGINWALLV ARICQLYPNA LPSMLVSRFF RVYTQWRWPN PVMLCAIEEG TLGLQVWDPR
301: KYPKDRFHLM PIITPAYPCM NSSYNVSSST LRIMSEEFKR GNEISEVMEA NKADWATLCE PYPFFEAYKN YLQIEIAAEN ADDLRKWKGW VESRLRQLTL
401: KIERHTYNML QCHPHPGDFS DKSRPFHCCY FMGLQRKQGV PASEGEQFDI RLTVDEFKHS VGMYTLWKPG MEIHVIHVRR RNIPNFVFPG GYGYKYVGKD
501: KERKIDGSVR CSHPIKTLSS SGGSPSSTEA EKIAIEKIMS GPYVSHQAFP GELDELEDDV EYKNQVKDFT GSTKGSSAES SKANVAEEPL TTTSGTVPCT
601: ILSPNGGLEE LEPAELMPPL SYGNRPSSTE QKKPIIRLSF TSLAKATGKS T

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.