Factsheet for GSMUA_AchrUn_randomP16340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	63.66	72.66
CDY58017	Canola	cytosol, nucleus, plasma membrane	28.4	71.77
Zm00001d031424_P001	Maize	cytosol	15.88	69.01
Zm00001d044377_P001	Maize	cytosol	14.0	67.1
Zm00001d040140_P001	Maize	cytosol	16.29	66.85
Os06t0319600-01	Rice	cytosol	11.57	66.67
Zm00001d016073_P001	Maize	cytosol	16.42	64.21
KRH39125	Soybean	nucleus	63.39	62.22
CDY21725	Canola	nucleus	58.55	61.18
VIT_01s0011g04320.t01	Wine grape	nucleus	58.95	61.17
CDX81855	Canola	nucleus	58.28	60.99
KRH48590	Soybean	nucleus	61.91	60.77
AT1G17980.1	Thale cress	nucleus	57.87	60.31
CDX83877	Canola	nucleus	57.74	60.25
Bra031010.1-P	Field mustard	nucleus	55.72	60.09
CDX96740	Canola	nucleus	57.6	60.03
Bra016573.1-P	Field mustard	nucleus	54.78	58.81
Solyc05g008630.2.1	Tomato	nucleus	53.7	58.5
Bra024894.1-P	Field mustard	nucleus	51.68	57.14
CDX77811	Canola	nucleus	53.16	57.0
CDY17685	Canola	nucleus	51.68	56.8
TraesCS4D01G067100.1	Wheat	nucleus	55.45	56.52
KRH60473	Soybean	cytosol	45.22	56.38
TraesCS4B01G068100.1	Wheat	nucleus	55.05	56.1
PGSC0003DMT400078394	Potato	nucleus	53.43	55.99
TraesCS4A01G246800.1	Wheat	nucleus	54.64	55.77
EER93704	Sorghum	cytosol	55.85	55.33
Zm00001d033448_P004	Maize	nucleus	54.64	54.5
Zm00001d013599_P016	Maize	nucleus	54.64	54.13
HORVU4Hr1G011370.8	Barley	nucleus	55.05	54.1
GSMUA_Achr10P...	Banana	nucleus	47.78	51.08
GSMUA_Achr6P14860_001	Banana	nucleus	46.3	51.04
GSMUA_Achr9P16270_001	Banana	nucleus	49.66	46.12
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	23.69	31.6

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0045824
GO:GO:0048366	GO:GO:0048451	EnsemblPlantsGene:GSMUA_AchrUn_randomG16340_001	EnsemblPlants:GSMUA_AchrUn_randomP16340_001	EnsemblPlants:GSMUA_AchrUn_randomT16340_001	UniProt:M0U9P3
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF22
InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301
SUPFAM:SSF81631	UniParc:UPI000296B5EA	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16340_001]

Coordinates

chrchrUn_random:-:77524342..77529459

Molecular Weight (calculated)

83114.4 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.443

Length

743 amino acids

Sequence
(BLAST)

001: MESSGLVKRS NGHLGVTEPI SWSGPTEYDV IKTQELEKYL ADAGLYESQE EAVSREEILG RLDQIVKIWV KKVSRAKGFN EQFVQEANAK IFTFGSYRLG
101: VHGPGADIDT LCVGPRHATR EEDFFTELHN MLSEMPEVTE LHPVPDAHVP VMRFKFSGVS IDLLYAKLSL WVIPEDLDIS QDSILQNADE QTVRSLNGCR
201: VTDQILRLVP NIQNFRTTLR CMRFWAKRRG VYSNVAGFLG GINWALLVAR ICQLYPNALP SMLVSRFFRV YTQWRWPNPV MLCEIQEGTL GLPIWDPRRN
301: FRDRLHQMPI ITPAYPCMNS SYNVSSSTLR VMTEEFQRGN EICEAMEANK ADWDTLFEPY PFFEAYKNYL EIDITADNES DLRKWKGWVE SRLRTLTLKI
401: ERHTFGMLHC HPCPRDFSDK SRPFHCCYFM GLQRKQGVPV QESEQFDIRG TVDDFKNSVS MYTLWKPGME IQVSHRKRRN VPLFVFPGGV RPSRPPKVAG
501: VDGHAQMEGK GASCDPIVES SSESRKGKQL DNRTDSNAAN MNNLVDHILK PSEMGTPSSF ANGVLDVPDE SRKRKCMDVT TDSFATGSEF QADHSFKRPE
601: TSAAIAASVG PVTEVDNGES IFCSKEAETL AISKITSVPP SNLAALPEGL DELEYFESQG HDKGFGGPVG GHSVESSTVK DAITQLGSSY GSNTKNGGVE
701: ELEKSSELSA PYLGGAPAST ANTQRKPLRL RLSTVAKSAG ERS

Best Arabidopsis Sequence Match ( AT1G17980.1 )
(BLAST)

001: MASVQQNGQR FGVSEPISMG GPTEFDVIKT RELEKHLQDV GLYESKEEAV RREEVLGILD QIVKTWIKTI SRAKGLNDQL LHEANAKIFT FGSYRLGVHG
101: PGADIDTLCV GPRHATREGD FFGELQRMLS EMPEVTELHP VPDAHVPLMG FKLNGVSIDL LYAQLPLWVI PEDLDLSQDS ILQNADEQTV RSLNGCRVTD
201: QILRLVPNIQ NFRTTLRCMR FWAKRRGVYS NVSGFLGGIN WALLVARICQ LYPNALPNIL VSRFFRVFYQ WNWPNAIFLC SPDEGSLGLQ VWDPRINPKD
301: RLHIMPIITP AYPCMNSSYN VSESTLRIMK GEFQRGNEIC EAMESNKADW DTLFEPFAFF EAYKNYLQID ISAANVDDLR KWKGWVESRL RQLTLKIERH
401: FKMLHCHPHP HDFQDTSRPL HCSYFMGLQR KQGVPAAEGE QFDIRRTVEE FKHTVNAYTL WIPGMEISVG HIKRRSLPNF VFPGGVRPSH TSKGTWDSNR
501: RSEHRNSSTS SAPAATTTTT EMSSESKAGS NSPVDGKKRK WGDSETLTDQ PRNSKHIAVS VPVENCEGGS PNPSVGSICS SPMKDYCTNG KSEPISKDPP
601: ENVVAFSKDP PESLPIEKIA TPQAHETEEL EESFDFGNQV IEQISHKVAV LSATATIPPF EATSNGSPFP YEAVEELEVL PTRQPDAAHR PSVQQRKPII
701: KLSFTSLGKT NGK

Arabidopsis Description

PAPS1Nuclear poly(A) polymerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.