Factsheet for Solyc12g038550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059810	Potato	cytosol	39.85	65.85
GSMUA_Achr6P35010_001	Banana	cytosol	36.9	29.94
TraesCS5D01G402200.1	Wheat	cytosol	39.11	25.42
HORVU5Hr1G095960.3	Barley	cytosol	39.48	25.3
TraesCS5B01G397200.1	Wheat	cytosol	39.11	24.88
TraesCS5A01G392400.1	Wheat	cytosol	38.75	24.76
KXG37531	Sorghum	cytosol	37.27	23.88
Os03t0754900-02	Rice	cytosol	36.16	22.58
Zm00001d034054_P002	Maize	cytosol	36.9	22.37
VIT_17s0000g05080.t01	Wine grape	cytosol	39.11	21.9
Solyc12g038540.1.1	Tomato	cytosol	2.95	12.31
Solyc12g038530.1.1	Tomato	cytosol	9.96	9.06

Protein Annotations

EnsemblPlants:Solyc12g038550.1.1	EnsemblPlantsGene:Solyc12g038550.1	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR44133	PANTHER:PTHR44133:SF1	PFscan:PS50082	PFscan:PS50294
ScanProsite:PS00678	SUPFAM:SSF50978	UniParc:UPI000276A4D4	UniProt:K4DEK4	MapMan:16.2.1.3.3	:

Description

No Description!

Coordinates

chr12:-:47323014..47330975

Molecular Weight (calculated)

30239.9 Da

IEP (calculated)

8.493

GRAVY (calculated)

0.198

Length

271 amino acids

Sequence
(BLAST)

001: MRDLIVLLFP SSFSPLIFQL RTFKFIQTVR TKSKRSCSKP VALTPKALHA LTIVLFVHFD VSTTVGLSIT CGLGLPSYQV SDKASLIAIE GKSVSELEKA
101: TSPCLRCIVA MACGFFQGAL NLLEAGLGFL TCQMVLSSRC QLLPLTSLSR EKWLFRRDER PYVDPLRLYI LSSAKDSSVK LWEVGTGRLV KQYVGATHTQ
201: LRCQAVFNDT EEFVLSIDES LNEIVAWDSL TTEIVARWPS NHIGAPRWLE HSPVEAAFVS CGIDRSIRHW T

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.