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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031460.1-P Field mustard cytosol 100.0 100.0
CDY03781 Canola cytosol 99.14 99.57
AT1G61010.4 Thale cress cytosol 94.67 94.81
CDY50214 Canola cytosol 30.55 89.08
KRH26351 Soybean nucleus 80.69 81.28
KRH44086 Soybean cytosol 78.96 79.65
HORVU5Hr1G123370.3 Barley cytosol 76.95 79.23
GSMUA_Achr6P00420_001 Banana cytosol, mitochondrion 73.34 78.91
PGSC0003DMT400001821 Potato cytosol 78.53 78.42
Os03t0852900-01 Rice plastid 78.24 77.57
TraesCS5D01G555600.1 Wheat cytosol 77.09 77.31
TraesCS5B01G537400.1 Wheat cytosol 77.09 77.31
TraesCS4A01G324800.1 Wheat cytosol 77.09 77.31
Zm00001d034876_P001 Maize plastid 77.52 77.19
VIT_12s0035g00170.t01 Wine grape plastid 20.46 77.17
EER90498 Sorghum plastid 76.95 76.83
TraesCS5D01G367600.1 Wheat cytosol 75.94 76.05
TraesCS5B01G360900.1 Wheat cytosol 75.5 75.61
Zm00001d012831_P001 Maize plastid 75.36 75.36
VIT_12s0035g00160.t01 Wine grape cytosol 15.99 74.5
Solyc07g049480.2.1 Tomato nucleus 78.39 74.42
TraesCS5B01G536400.1 Wheat cytosol 71.61 72.87
TraesCS4A01G336600.1 Wheat cytosol 61.24 70.6
TraesCS5A01G358600.1 Wheat cytosol, plasma membrane, plastid 67.29 69.81
HORVU5Hr1G088510.1 Barley mitochondrion, plastid 70.75 69.55
CDY09421 Canola cytosol 26.22 29.59
CDY66642 Canola cytosol 26.08 29.43
CDX88053 Canola cytosol 19.16 18.0
CDX80392 Canola cytosol 19.02 17.86
Protein Annotations
MapMan:16.2.1.2.3MapMan:16.2.2.1.5Gene3D:3.40.50.10890Gene3D:3.60.15.10UniProt:A0A078JNW0InterPro:Beta_Casp
EnsemblPlants:CDY68459ProteinID:CDY68459ProteinID:CDY68459.1InterPro:CPSF73-100_CEnsemblPlantsGene:GSBRNA2T00074255001InterPro:IPR036866
InterPro:Metallo-B-lactamasPFAM:PF00753PFAM:PF07521PFAM:PF10996PFAM:PF11718PANTHER:PTHR11203
PANTHER:PTHR11203:SF11InterPro:RMMBLInterPro:RibonucZ/Hydroxyglut_hydroSMART:SM00849SMART:SM01027SMART:SM01098
SUPFAM:SSF56281UniParc:UPI0002544E5ESEG:seg:::
Description
BnaAnng27360DBnaAnng27360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNW0]
Coordinates
chrLK037367:-:1458..4286
Molecular Weight (calculated)
77453.2 Da
IEP (calculated)
6.165
GRAVY (calculated)
-0.117
Length
694 amino acids
Sequence
(BLAST)
001: MASSSTSLKR REQQPMSREG DQLIVTPLGA GNEVGRSCVY MSFRGKTILF DCGINPAYSG MAALPYFDEI DPSTIDVLLI THFHLDHAAS LPYFLEKTTF
101: KGRVFMTHAT KAIYKLLLTD YVKVSKVSVE DMLFDEHDIN KSMDKIEVID FHQTVEVNGI KFWCYTAGHV LGAAMFMVDI AGVRILYTGD YSREEDRHLR
201: AAELPQFSPD ICIIESTSGV QLHQSRHIRE KRFTDVIHST VAQGGRVLIP AFALGRAQEL LLILDEYWAN HPDLHNIPIY YASPLAKKCM AVYQTYILSM
301: NDRIRNQFAN SNPFVFKHIS ALNSIDDFRD VGPSVVMASP GGLQSGFSRQ LFDIWCSDKR NACIIPGYMV EGTLAKTIIN EPKEVTLMNG LTAPLNMQVH
401: YISFSAHADY AQTSTFLKEL MPPNIILVHG EANEMMRLKQ KLFTEFPDGN TRIMNPKNCE SVEMYFNSEK MAKTIGRLAE KTPDVGDSVS GILVKKGFTY
501: QIMAPDDLHV FSQLSTATVT QRITIPFSGA FGVITHRLGK IFESVESSTD EETGLPALKV HERVTVKQES EKHISLQWSS DPISDMVSDS IVALVLNISR
601: EVPKIVAEEE VAVKSEEENG KKVEKVIYAL LVSLFGDVKL GENGKLVISV DGNVAHLDKE SGDVEGEHEG LKERVRVAFH RIQSAVKPIP LSAE
Best Arabidopsis Sequence Match ( AT1G61010.4 )
(BLAST)
001: MASSSTSLKR REQPISRDGD QLIVTPLGAG SEVGRSCVYM SFRGKNILFD CGIHPAYSGM AALPYFDEID PSSIDVLLIT HFHIDHAASL PYFLEKTTFN
101: GRVFMTHATK AIYKLLLTDY VKVSKVSVED MLFDEQDINK SMDKIEVIDF HQTVEVNGIK FWCYTAGHVL GAAMFMVDIA GVRILYTGDY SREEDRHLRA
201: AELPQFSPDI CIIESTSGVQ LHQSRHIREK RFTDVIHSTV AQGGRVLIPA FALGRAQELL LILDEYWANH PDLHNIPIYY ASPLAKKCMA VYQTYILSMN
301: DRIRNQFANS NPFVFKHISP LNSIDDFNDV GPSVVMATPG GLQSGLSRQL FDSWCSDKKN ACIIPGYMVE GTLAKTIINE PKEVTLMNGL TAPLNMQVHY
401: ISFSAHADYA QTSTFLKELM PPNIILVHGE ANEMMRLKQK LLTEFPDGNT KIMTPKNCES VEMYFNSEKL AKTIGRLAEK TPDVGDTVSG ILVKKGFTYQ
501: IMAPDELHVF SQLSTATVTQ RITIPFVGAF GVIKHRLEKI FESVEFSTDE ESGLPALKVH ERVTVKQESE KHISLQWSSD PISDMVSDSI VALILNISRE
601: VPKIVMEEED AVKSEEENGK KVEKVIYALL VSLFGDVKLG ENGKLVIRVD GNVAQLDKES GEVESEHSGL KERVRVAFER IQSAVKPIPL SAS
Arabidopsis Description
CPSF73-ICleavage and polyadenylation specificity factor subunit 3-I [Source:UniProtKB/Swiss-Prot;Acc:Q9C952]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.