Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G167200.1 | Wheat | cytosol | 66.22 | 63.02 |
| CDY52193 | Canola | nucleus | 13.85 | 22.78 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 16.89 | 18.8 |
| CDX90251 | Canola | nucleus | 13.51 | 17.7 |
| HORVU0Hr1G015410.3 | Barley | cytosol | 8.78 | 12.62 |
| TraesCS7A01G461800.1 | Wheat | nucleus | 20.61 | 9.38 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G138900.1 | EnsemblPlantsGene:TraesCS6A01G138900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | PFscan:PS50103 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:110348180..110352133
Molecular Weight (calculated)
31547.3 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.613
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGDGDGD GSLRFDFEDD VDASSAGSGS ASSEAPILAV GGPSRGRGHG SIEMDGDEDS LRFDFEDGLD AAGAGTESSA WPFEAPIPSA GGPSHGPGSR
101: SIQMDGDEGS LRFDIEDYLD SVAAGSGSDE EIPECRMFSV GFCLNGSNCK CMHVKLPGSP PVQEVLQKFQ QTNAYNYGSS STTYQPRDNN CKQKAKPQVQ
201: HESVLKNQNL AVNATLVAQQ PAAQHVQTAN PPPHLQQQQN AQVQGVHNGS SIQKLPQLQA HFHKGNQGTW LLNVATRRIW ILVQWGVCAP QKGLMR
101: SIQMDGDEGS LRFDIEDYLD SVAAGSGSDE EIPECRMFSV GFCLNGSNCK CMHVKLPGSP PVQEVLQKFQ QTNAYNYGSS STTYQPRDNN CKQKAKPQVQ
201: HESVLKNQNL AVNATLVAQQ PAAQHVQTAN PPPHLQQQQN AQVQGVHNGS SIQKLPQLQA HFHKGNQGTW LLNVATRRIW ILVQWGVCAP QKGLMR
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYP SPFS
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYP SPFS
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.