Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52193 | Canola | nucleus | 16.99 | 19.44 |
| TraesCS6B01G167200.1 | Wheat | cytosol | 24.76 | 16.4 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 20.87 | 16.17 |
| CDX90251 | Canola | nucleus | 16.99 | 15.49 |
| TraesCS6A01G138900.1 | Wheat | nucleus | 12.62 | 8.78 |
| HORVU7Hr1G106340.5 | Barley | cytosol | 20.39 | 6.47 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G015410.3 | EnsemblPlantsGene:HORVU0Hr1G015410 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | PFscan:PS50103 |
| SEG:seg | SUPFAM:SSF90229 | UniParc:UPI000B48343A | UniProt:A0A287E233 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchrUn:-:83985149..83986054
Molecular Weight (calculated)
19767.1 Da
IEP (calculated)
5.006
GRAVY (calculated)
-0.264
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXSASSEA PILAVGGPSR GCGLQMDGDE DNLRFDFEDD LDAAGAGTGH SVGYFEALIP AAGGPSHGPG IGSFQMDGDE
101: GSLRFDFEDY LDAVGAGSGS MSASSEAPIP VTKGLSHGHR RVIFQQTVCQ HWLRGLCKKA EPCSFLHQFD MDHMPVCHFH HAFRFCCAED CNLKHEIQVC
201: EMWRRY
101: GSLRFDFEDY LDAVGAGSGS MSASSEAPIP VTKGLSHGHR RVIFQQTVCQ HWLRGLCKKA EPCSFLHQFD MDHMPVCHFH HAFRFCCAED CNLKHEIQVC
201: EMWRRY
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYP SPFS
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYP SPFS
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.