Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G138900.1 | Wheat | nucleus | 63.02 | 66.22 |
| CDY52193 | Canola | nucleus | 15.11 | 26.11 |
| HORVU0Hr1G015410.3 | Barley | cytosol | 16.4 | 24.76 |
| PGSC0003DMT400054373 | Potato | cytosol, nucleus, plastid | 17.68 | 20.68 |
| CDX90251 | Canola | nucleus | 14.79 | 20.35 |
| TraesCS7B01G363200.2 | Wheat | nucleus | 21.22 | 10.11 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G167200.1 | EnsemblPlantsGene:TraesCS6B01G167200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF59 | PFscan:PS50103 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6B:-:175726767..175730014
Molecular Weight (calculated)
33287.9 Da
IEP (calculated)
5.280
GRAVY (calculated)
-0.470
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDGDGSL RFDFEEDIDA FSFGSGSASS KAPILAVGGP SRGRGHGSIE MDGDEDSLRF DFEDGLDAAG AGTESSAWPF EAPIPAAGGP SHGPGSGSIQ
101: MDGDEGSLRF DIEDYLDSVG AGSGSDEEIP ECIMFSVGFC LNGPNCKCMH VKLPGPPPVQ EVLQKFQQMN AYDYGSSSTT YQPRDNNCKQ KAKPQVQHAS
201: VLENQNLAVN ATLVAQQPAA QHVQTANPPP HLQQQQNAQV QGVHNGSSIQ KLPQLQAHFH KGNQGTRLLN VATRRIWILV QWGVCAPQKG LMRLNLTKCV
301: HGQCHFNILH L
101: MDGDEGSLRF DIEDYLDSVG AGSGSDEEIP ECIMFSVGFC LNGPNCKCMH VKLPGPPPVQ EVLQKFQQMN AYDYGSSSTT YQPRDNNCKQ KAKPQVQHAS
201: VLENQNLAVN ATLVAQQPAA QHVQTANPPP HLQQQQNAQV QGVHNGSSIQ KLPQLQAHFH KGNQGTRLLN VATRRIWILV QWGVCAPQKG LMRLNLTKCV
301: HGQCHFNILH L
001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R
Arabidopsis Description
CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.