Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27989 | Soybean | cytosol | 57.83 | 85.45 |
| CDY04384 | Canola | nucleus | 44.95 | 51.45 |
| CDY47426 | Canola | nucleus | 45.2 | 50.85 |
| Bra033125.1-P | Field mustard | nucleus | 43.69 | 49.86 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 43.43 | 46.49 |
| Solyc08g007760.2.1 | Tomato | nucleus | 33.33 | 44.15 |
| Solyc08g007750.2.1 | Tomato | nucleus | 35.61 | 38.21 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 41.92 | 37.39 |
| Solyc08g007730.2.1 | Tomato | cytosol | 34.34 | 34.43 |
| PGSC0003DMT400032616 | Potato | cytosol | 16.41 | 28.02 |
| KRH36762 | Soybean | nucleus | 25.0 | 14.54 |
| KRH11760 | Soybean | nucleus | 24.49 | 14.04 |
Protein Annotations
| EMBL:ACUP02000673 | EnsemblPlants:KRH77450 | EnsemblPlantsGene:GLYMA_01G214100 | EntrezGene:100784130 | Gene3D:3.10.590.10 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 |
| PANTHER:PTHR12357:SF3 | PFAM:PF04146 | PFscan:PS50882 | ProteinID:KRH77450 | ProteinID:KRH77450.1 | ProteinID:KRH77451.1 |
| UniParc:UPI00023374FA | UniProt:K7K541 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:54514612..54517804
Molecular Weight (calculated)
44441.5 Da
IEP (calculated)
5.845
GRAVY (calculated)
-0.704
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDSAKENA SVVDSSVTEG RNDIGNSDDP ESSGYKFNEN INTTRADKGG HSHGQIGHPT GIGVEKWHNI KYFIIKSLNH QNIHLSIEKG IWATQIMNEP
101: ILEEAFHNSG SVILIFSVNM SGSFQGYAQM MSSIGRGRDN VWSEGTGKSN PWGRSFKVKW MCLNDLPFHK TLHLKNPLND YKPVKISRDC QELSPDIGLA
201: LCELLDGKNY TDCLPTSLSR DEFSLKGLYA NTPSSMGDED CNFPPLHTSW SMPLPYSALF YQNQPEVNNY HSTNQRISGT MFTEILPTTS ESSQVSGIKR
301: SKDVASQSDF WGLSSESPLA STLTEDDFLD MSYEEYLEVH SRCKKQLRTS ATKPSWKQLE LLRSNSHDDD RNTEDGVDRD RSNSHGRIHQ SSLPWI
101: ILEEAFHNSG SVILIFSVNM SGSFQGYAQM MSSIGRGRDN VWSEGTGKSN PWGRSFKVKW MCLNDLPFHK TLHLKNPLND YKPVKISRDC QELSPDIGLA
201: LCELLDGKNY TDCLPTSLSR DEFSLKGLYA NTPSSMGDED CNFPPLHTSW SMPLPYSALF YQNQPEVNNY HSTNQRISGT MFTEILPTTS ESSQVSGIKR
301: SKDVASQSDF WGLSSESPLA STLTEDDFLD MSYEEYLEVH SRCKKQLRTS ATKPSWKQLE LLRSNSHDDD RNTEDGVDRD RSNSHGRIHQ SSLPWI
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.