Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007750.2.1 | Tomato | nucleus | 83.61 | 67.75 |
| Solyc08g007730.2.1 | Tomato | cytosol | 64.55 | 48.86 |
| Bra033125.1-P | Field mustard | nucleus | 45.82 | 39.48 |
| CDY47426 | Canola | nucleus | 45.82 | 38.92 |
| CDY04384 | Canola | nucleus | 44.48 | 38.44 |
| PGSC0003DMT400032616 | Potato | cytosol | 29.1 | 37.5 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 44.48 | 35.95 |
| KRH27989 | Soybean | cytosol | 31.1 | 34.7 |
| KRH77450 | Soybean | nucleus | 44.15 | 33.33 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 40.8 | 27.48 |
| Solyc02g021760.2.1 | Tomato | nucleus | 23.41 | 10.16 |
| Solyc02g070240.2.1 | Tomato | nucleus | 22.74 | 10.13 |
Protein Annotations
| EnsemblPlants:Solyc08g007760.2.1 | EnsemblPlantsGene:Solyc08g007760.2 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | UniParc:UPI000276C851 | UniProt:K4CIR3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:-:2275280..2278977
Molecular Weight (calculated)
33858.6 Da
IEP (calculated)
6.789
GRAVY (calculated)
-0.703
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEAILDEAF HNSSKVILIF SVNMSGYFQG YAQMISSVGL RRDQVWSQGN GGRNPWGRSF EVNWLRLYDL PFQRTLHLKN PWNQYKPVKI SRDCQELPPD
101: IGEALCELLD GKDALDVDLK MDIFARNDFS SKRPYVEPSL HLGDQDCNAS LIPNGTMFYP SLLYQHQIDA SRLHVAPQRI NGVFSAEESA IASGESKSRQ
201: SRHSKRNRSL ANLHVDTEMG RQINMWGLPA ERSPLASNLT EDDILEMTYE EYLEAYSRGS KRSPHPVSGP SRSTQRSLAS EDNCDDSQSG CSSKKRRSH
101: IGEALCELLD GKDALDVDLK MDIFARNDFS SKRPYVEPSL HLGDQDCNAS LIPNGTMFYP SLLYQHQIDA SRLHVAPQRI NGVFSAEESA IASGESKSRQ
201: SRHSKRNRSL ANLHVDTEMG RQINMWGLPA ERSPLASNLT EDDILEMTYE EYLEAYSRGS KRSPHPVSGP SRSTQRSLAS EDNCDDSQSG CSSKKRRSH
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.