Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007760.2.1 | Tomato | nucleus | 67.75 | 83.61 |
| Solyc08g007730.2.1 | Tomato | cytosol | 63.41 | 59.24 |
| PGSC0003DMT400032616 | Potato | cytosol | 33.88 | 53.88 |
| Bra033125.1-P | Field mustard | nucleus | 40.65 | 43.23 |
| CDY47426 | Canola | nucleus | 40.65 | 42.61 |
| CDY04384 | Canola | nucleus | 39.84 | 42.49 |
| KRH27989 | Soybean | cytosol | 30.08 | 41.42 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 40.92 | 40.81 |
| KRH77450 | Soybean | nucleus | 38.21 | 35.61 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.86 | 30.63 |
| Solyc02g021760.2.1 | Tomato | nucleus | 25.47 | 13.64 |
| Solyc02g070240.2.1 | Tomato | nucleus | 24.39 | 13.41 |
Protein Annotations
| EnsemblPlants:Solyc08g007750.2.1 | EnsemblPlantsGene:Solyc08g007750.2 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | UniParc:UPI000276C850 | UniProt:K4CIR2 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:-:2251358..2271383
Molecular Weight (calculated)
41092.4 Da
IEP (calculated)
6.990
GRAVY (calculated)
-0.496
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEGILTDQT YSSCLGVIEG GEFTVSSPST GISSAIEKGK LYGIRYFVIK SLNHENIQLS VNRGIWATQA MNEAILDEAF HNSSKVILIF SVNMSGYFQG
101: YAQMISSVGL RRDQVWSQGN GGRNPWGRSF EVNWLRLYDL PFQRTLHLKN PWNQDKPVKI SRDCQELPPD IGEALCELLE GQDSMDVDLK MDTFARNDLS
201: SKRPYVEPSL HLGFQDCNAS LVPNGTMFYP SSLYQHQIDA SRLQVAPVRI NGVFSAEESA IASVESKSRQ SRHSKRNRSL ANLHVDTGMG PQINMLGLPA
301: ERSPLSSNLT EVDILEMTYD EYLEACSRGS KRSPHPVSGP SRSTQRSLAS EVNCDDSQSG CSSKKRRSH
101: YAQMISSVGL RRDQVWSQGN GGRNPWGRSF EVNWLRLYDL PFQRTLHLKN PWNQDKPVKI SRDCQELPPD IGEALCELLE GQDSMDVDLK MDTFARNDLS
201: SKRPYVEPSL HLGFQDCNAS LVPNGTMFYP SSLYQHQIDA SRLQVAPVRI NGVFSAEESA IASVESKSRQ SRHSKRNRSL ANLHVDTGMG PQINMLGLPA
301: ERSPLSSNLT EVDILEMTYD EYLEACSRGS KRSPHPVSGP SRSTQRSLAS EVNCDDSQSG CSSKKRRSH
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.