Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g007760.2.1 | Tomato | nucleus | 48.86 | 64.55 |
| Solyc08g007750.2.1 | Tomato | nucleus | 59.24 | 63.41 |
| VIT_02s0025g04760.t01 | Wine grape | nucleus | 40.25 | 42.97 |
| KRH27989 | Soybean | cytosol | 29.11 | 42.91 |
| Bra033125.1-P | Field mustard | nucleus | 35.44 | 40.35 |
| CDY04384 | Canola | nucleus | 34.68 | 39.6 |
| CDY47426 | Canola | nucleus | 34.94 | 39.2 |
| KRH77450 | Soybean | nucleus | 34.43 | 34.34 |
| AT4G11970.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.94 | 31.08 |
| Solyc02g021760.2.1 | Tomato | nucleus | 26.08 | 14.95 |
| Solyc02g070240.2.1 | Tomato | nucleus | 24.56 | 14.46 |
Protein Annotations
| EnsemblPlants:Solyc08g007730.2.1 | EnsemblPlantsGene:Solyc08g007730.2 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF3 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | UniParc:UPI000276C84E | UniProt:K4CIR0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:-:2230630..2237873
Molecular Weight (calculated)
44221.7 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.642
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSDTARKNA AIANSIVTDY KNERRNFDGP DSSCLRVNED TNRSIAEELT LSSPPIGIST AIEKGKLYSI RYFVIKSLNH ENIQLSVNRG IWATQAMNEA
101: ILDEAFHNSS KVILIFSVNT SGYFQGYAQM ISSVGLRRDQ VWSQGNGGRN SWGRSFEVNW LRLYDLPFQR TLHLKNPWNQ NKPVKISRDC QELPPDIGEA
201: LCELLDGQDA LDVNLKMDVF ARNELSSKRP YVEPSLHLGD QDYNASLIPN GTMFSPSLLY QHQIDASRLH VAPLRINGVF SAEESAIASG ESKSGQSRHS
301: QRNRSFANLH VDTDMGPQIN MWGLPAERSP LASNLTEDDI LEMTYEEYLE ACSRGSKRSP HPVSGPSRST QRSLASQENC EDSQSGRSSK KRRGH
101: ILDEAFHNSS KVILIFSVNT SGYFQGYAQM ISSVGLRRDQ VWSQGNGGRN SWGRSFEVNW LRLYDLPFQR TLHLKNPWNQ NKPVKISRDC QELPPDIGEA
201: LCELLDGQDA LDVNLKMDVF ARNELSSKRP YVEPSLHLGD QDYNASLIPN GTMFSPSLLY QHQIDASRLH VAPLRINGVF SAEESAIASG ESKSGQSRHS
301: QRNRSFANLH VDTDMGPQIN MWGLPAERSP LASNLTEDDI LEMTYEEYLE ACSRGSKRSP HPVSGPSRST QRSLASQENC EDSQSGRSSK KRRGH
001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMSYEE YVETHGKCMK QLGLPVIPQS RSIQEPSSRT DDVSNGSSKD QPSSRKRGRH SS
Arabidopsis Description
YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.