CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77450	Soybean	nucleus	85.45	57.83
VIT_02s0025g04760.t01	Wine grape	nucleus	58.21	42.16
CDY04384	Canola	nucleus	52.99	41.04
CDY47426	Canola	nucleus	53.36	40.62
Bra033125.1-P	Field mustard	nucleus	51.12	39.48
AT4G11970.1	Thale cress	cytosol, nucleus, plasma membrane	54.85	33.11
Solyc08g007760.2.1	Tomato	nucleus	34.7	31.1
Solyc08g007750.2.1	Tomato	nucleus	41.42	30.08
Solyc08g007730.2.1	Tomato	cytosol	42.91	29.11
PGSC0003DMT400032616	Potato	cytosol	22.01	25.43
KRH36762	Soybean	nucleus	33.58	13.22
KRH11760	Soybean	nucleus	33.21	12.88

Protein Annotations

EMBL:ACUP02006737	EnsemblPlants:KRH27989	EnsemblPlantsGene:GLYMA_11G027800	EntrezGene:100799369	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF3	PFAM:PF04146	PFscan:PS50882	ProteinID:KRH27989	ProteinID:KRH27989.1	SEG:seg
UniParc:UPI0002968C51	UniProt:K7LMR0	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:2000192..2004609

Molecular Weight (calculated)

29846.3 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.551

Length

268 amino acids

Sequence
(BLAST)

001: MSSDSAKENA SVVDSSVTEW RNDIGNSDDP ESSGYKFKEN INPTRADKGG HSHGQIGHPA GIGVEKCHNT KYFVIKSLNH QNIHLSIEKG IWATQIMNEP
101: ILQEAYHNSG SVILIFSVNM SGSFQGYAQM MTSIGRGRDN AWSEGTGKSN PWGRSFKVKW LCLNDLPFHK TLHLKNPLND YKPVKISRDC QELSPDIGLA
201: LCKLLDGKND TDGLLTSLSR DEFSLKGHYV STPSSMGDED CNFPPLHMLW PMPLPYSFLF LPKSTRSK

Best Arabidopsis Sequence Match ( AT4G11970.1 )
(BLAST)

001: MSSDTAKENA SVVDSSLTDW KQDLGNSDDP ESTSYRSKED HKLSKVDVDR RNFPDQLESA KANKNSKPGY RTRYFIIKSL NYDNIQVSVE KGIWATQVMN
101: EPILEGAFHK SGRVILIFSV NMSGFFQGYA EMLSPVGWRR DQIWSQGGGK NNPWGRSFKV KWLRLSELPF QKTLHLKNPL NDYKPVKISR DCQELPEDIG
201: EALCELLDAN SCDDGLLNSS SRDDYSTKRS RAEPPSSSGD DEYNNNLWGH TPMSYPPTVY PNQDDLSRFH LAQQRGYGVS PEYLHTSPGA SNSRTEQDKS
301: LRFNSWCLPL ESPLANSLTD DDFLEMVVAY LLVTYAENFI PLRPLVLELD IFCKSCCLVE SRIVMTHYWK LGENICSIFQ TLSYFSVLFL IHNTYISQCL
401: AEFCIDVTGT SFCFLRSIMR SGYVVVVCLT KSCDCVFLLF FAVL

Arabidopsis Description

YTH family protein [Source:UniProtKB/TrEMBL;Acc:F4JPV2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.