Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G030900.2 | Wheat | cytosol | 87.83 | 89.91 |
| TraesCS5D01G039100.2 | Wheat | plastid | 91.3 | 82.68 |
| HORVU4Hr1G046610.1 | Barley | cytosol, mitochondrion, nucleus | 82.03 | 76.28 |
| TraesCS7B01G462300.1 | Wheat | cytosol | 50.72 | 72.31 |
| HORVU7Hr1G118340.7 | Barley | cytosol, endoplasmic reticulum, plastid | 67.83 | 56.66 |
| Zm00001d047492_P001 | Maize | cytosol | 56.52 | 56.2 |
| Os03t0345700-01 | Rice | cytosol, nucleus | 39.13 | 54.0 |
| KXG39397 | Sorghum | cytosol | 57.39 | 46.48 |
| Zm00001d029126_P001 | Maize | nucleus | 55.94 | 41.77 |
| TraesCS2B01G134100.1 | Wheat | cytosol | 39.13 | 39.47 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 25.51 | 36.82 |
| GSMUA_Achr5P21400_001 | Banana | cytosol | 29.57 | 33.44 |
| GSMUA_Achr11P... | Banana | cytosol | 29.86 | 31.89 |
| TraesCS3B01G489000.1 | Wheat | cytosol | 30.14 | 31.14 |
| TraesCS1B01G245900.1 | Wheat | cytosol | 27.25 | 30.62 |
| VIT_14s0060g02090.t01 | Wine grape | cytosol | 29.28 | 28.86 |
| GSMUA_Achr1P24670_001 | Banana | cytosol | 24.06 | 28.33 |
| VIT_05s0020g01450.t01 | Wine grape | cytosol, endoplasmic reticulum, nucleus | 24.64 | 27.78 |
| GSMUA_Achr8P10080_001 | Banana | endoplasmic reticulum | 32.46 | 26.79 |
| PGSC0003DMT400063687 | Potato | cytosol | 28.7 | 26.61 |
| Solyc01g099600.2.1 | Tomato | cytosol | 28.7 | 26.4 |
| KRH37116 | Soybean | cytosol | 20.29 | 26.02 |
| Solyc01g066880.2.1 | Tomato | cytosol | 22.61 | 24.84 |
| PGSC0003DMT400029504 | Potato | nucleus | 22.03 | 24.6 |
| KRH33893 | Soybean | cytosol | 26.38 | 24.2 |
| Bra027947.1-P | Field mustard | nucleus | 24.64 | 24.08 |
| CDY41724 | Canola | nucleus | 24.64 | 24.08 |
| KRH02248 | Soybean | cytosol | 20.58 | 24.07 |
| CDY53573 | Canola | nucleus | 24.06 | 23.85 |
| AT1G56210.1 | Thale cress | nucleus | 24.64 | 23.35 |
| KRH50862 | Soybean | cytosol | 19.71 | 23.13 |
| KRH68524 | Soybean | cytosol | 23.48 | 23.01 |
| TraesCS1B01G119400.1 | Wheat | cytosol, plastid | 25.51 | 21.73 |
| CDY05566 | Canola | nucleus | 20.87 | 20.17 |
| Bra020580.1-P | Field mustard | nucleus | 20.87 | 20.06 |
| CDY25027 | Canola | cytosol | 20.87 | 19.94 |
| AT5G27690.1 | Thale cress | nucleus | 19.71 | 19.32 |
| KRH12046 | Soybean | cytosol | 19.42 | 18.56 |
| TraesCS5B01G131600.1 | Wheat | cytosol | 26.09 | 17.34 |
| TraesCS3B01G034100.1 | Wheat | cytosol | 20.58 | 16.9 |
| TraesCS4B01G134000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.35 | 14.71 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G030300.1 | EnsemblPlantsGene:TraesCS5B01G030300 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF124 | PFAM:PF00403 | PFscan:PS50846 | SEG:seg | SUPFAM:SSF55008 |
| TIGR:cd00371 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:33556033..33557512
Molecular Weight (calculated)
37531.3 Da
IEP (calculated)
6.022
GRAVY (calculated)
-1.143
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQTFVLRV TIHCHGCKKK VRKVLKSVEG VQDVKVDAQL HKVMVTGTVD AETLIKRLNK SGKQALPWQH TPAKNPDPAP ADAPAPAEDG SKDAAVADKK
101: PAEEPQADSS DKKPEQETAS EKKPEQETAS EKKPETEKEA ESEKKADKEE AKPSDEAKKD GGEGAAAEPK PKAKGTEPAA AAKEAGDDEG EAKKKQSKPK
201: DADRSLAPAP APAHAPRYAH QEFNAPQPVM SYNMAQPRAS VSHYAPQPEQ GYSQQQQAGY SSSSSMMVTQ HPPPPAQQAY SQQAQPMQQW SPSYLYMPYP
301: HASPESYYQD YYSPPGTHAS PPPPPPLQDS YRLFDDENPN SCSVM
101: PAEEPQADSS DKKPEQETAS EKKPEQETAS EKKPETEKEA ESEKKADKEE AKPSDEAKKD GGEGAAAEPK PKAKGTEPAA AAKEAGDDEG EAKKKQSKPK
201: DADRSLAPAP APAHAPRYAH QEFNAPQPVM SYNMAQPRAS VSHYAPQPEQ GYSQQQQAGY SSSSSMMVTQ HPPPPAQQAY SQQAQPMQQW SPSYLYMPYP
301: HASPESYYQD YYSPPGTHAS PPPPPPLQDS YRLFDDENPN SCSVM
001: MTKDEDFKLL KIQTFSLRVN IHCEGCNKKV KKLLQRIEGV CHVKIEAEHQ KVTVSGSVDS ATLINKLVKA GKHAELWSPN PNQNQPQKPK TNDFIKNVNQ
101: KGQKQGSAKS GIEACKPKNG PKGAAFVAEE DGDGSEEEDG DVQFPKPANQ QQQQNVVNAK KNSGGAAMNN GNNGVNAASK KVNQKQSNHN QNTQQVMAAM
201: RMRTAGKMST GVEANEIGAL MGLAGFNGAT NAVNHPPNGI QQQLQAPPLN NVNGVTNHNL TNSNGGMMMN MNGYNNHHPM NMQSRQMMHQ PQQMMYQRSS
301: FVPASSNGYY YNYTPSPYSY YPYYPYASDQ YQQQSSHSHA TNMSSEEDAG NNNSCNIM
101: KGQKQGSAKS GIEACKPKNG PKGAAFVAEE DGDGSEEEDG DVQFPKPANQ QQQQNVVNAK KNSGGAAMNN GNNGVNAASK KVNQKQSNHN QNTQQVMAAM
201: RMRTAGKMST GVEANEIGAL MGLAGFNGAT NAVNHPPNGI QQQLQAPPLN NVNGVTNHNL TNSNGGMMMN MNGYNNHHPM NMQSRQMMHQ PQQMMYQRSS
301: FVPASSNGYY YNYTPSPYSY YPYYPYASDQ YQQQSSHSHA TNMSSEEDAG NNNSCNIM
Arabidopsis Description
Heavy metal transport/detoxification superfamily protein [Source:TAIR;Acc:AT1G23000]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.