Factsheet for PGSC0003DMT400000655

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096100.2.1	Tomato	nucleus	87.45	86.71
KRH68927	Soybean	nucleus	40.0	44.13
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	44.68	43.93
KRG97204	Soybean	nucleus	39.36	43.43
KRH47890	Soybean	cytosol, mitochondrion	38.3	40.54
KRH06447	Soybean	cytosol, mitochondrion	37.45	39.55
Zm00001d020233_P001	Maize	mitochondrion	33.19	33.48
Zm00001d005653_P001	Maize	nucleus	32.98	33.26
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	32.98	33.26
Os08t0400300-01	Rice	nucleus	33.83	33.06
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	32.34	32.83
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	32.55	32.69
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	32.55	32.62
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	32.98	32.43
Os09t0363500-01	Rice	mitochondrion	31.7	32.18
Zm00001d032283_P004	Maize	mitochondrion	32.77	32.15
EES13800	Sorghum	mitochondrion	32.55	31.94
PGSC0003DMT400047670	Potato	nucleus	21.7	25.06
GSMUA_AchrUn_...	Banana	cytosol	8.72	17.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400000655	EnsemblPlantsGene:PGSC0003DMG400000234	EntrezGene:102587530	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	PGSC:PGSC0003DMG400000234	RefSeq:XP_006339728.1	RefSeq:XP_006339729.1
RefSeq:XP_015167875.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002950C60	UniProt:M0ZH41	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000234]

Coordinates

chr1:-:73643419..73648701

Molecular Weight (calculated)

52440.8 Da

IEP (calculated)

7.885

GRAVY (calculated)

-0.599

Length

470 amino acids

Sequence
(BLAST)

001: MAVAEARTAW QRAVNRCLVQ EDAKRAPKLA CCSSASPSSK QVDAGPANGA DAQNPSGTYF LPFDRNSSYC DLSPNSRWWL HLQPNYGYQK GLVSELVDSI
101: EAEMENIGPV LDSIPKYNKL CDQNEADSIC VDKFTVGGSL DSQVTRSASY VNNDLGVGSK ELTDVFTEIS KDSPNLEDTG YPNKASKKGL VDLTVGKQID
201: ELPFDTEYPW IGVEKTEPWW RTADTEELAL LVAQRSHDFM ENCDLPQPQN NFVKQDRDVD VDSKIYASST GPKAGSMHQQ NTNIYKRGNL SFERPSQLDA
301: EGKLQLHTCK SSSLKNSDTP SQKVVPEMNT SGDDESKAQL LKALRHSQTR AREAENAAKQ AFAEKEHVVQ LVFRQASQLF AYKQWFQLLQ LENFYFQIKN
401: NKKQPISAML PRVPQKTKRP QKKSARMKRA KCGCPKYDLS RYAVVFALGL GLVGAGLLLG WTVGWMVPTF

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.